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LINC02471 (long intergenic non-protein coding RNA 2471)

Identity

Other alias-
HGNC (Hugo) LINC02471
LocusID (NCBI) 105369734
Atlas_Id 80049
Location 12q12  [Link to chromosome band 12q12]
Location_base_pair Starts at 40156239 and ends at 40167847 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)LINC02471   53410
Cards
Entrez_Gene (NCBI)LINC02471  105369734  long intergenic non-protein coding RNA 2471
Aliases
GeneCards (Weizmann)LINC02471
Ensembl hg19 (Hinxton)ENSG00000223914 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000223914 [Gene_View]  ENSG00000223914 [Sequence]  chr12:40156239-40167847 [Contig_View]  LINC02471 [Vega]
ICGC DataPortalENSG00000223914
TCGA cBioPortalLINC02471
AceView (NCBI)LINC02471
Genatlas (Paris)LINC02471
WikiGenes105369734
SOURCE (Princeton)LINC02471
Genetics Home Reference (NIH)LINC02471
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02471  -     chr12:40156239-40167847 +  12q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02471  -     12q12   [Description]    (hg19-Feb_2009)
EnsemblLINC02471 - 12q12 [CytoView hg19]  LINC02471 - 12q12 [CytoView hg38]
Mapping of homologs : NCBILINC02471 [Mapview hg19]  LINC02471 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02471
Alternative Splicing GalleryENSG00000223914
Gene ExpressionLINC02471 [ NCBI-GEO ]   LINC02471 [ EBI - ARRAY_EXPRESS ]   LINC02471 [ SEEK ]   LINC02471 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02471 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105369734
GTEX Portal (Tissue expression)LINC02471
Human Protein AtlasENSG00000223914-LINC02471 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02471
DMDM Disease mutations105369734
Blocks (Seattle)LINC02471
Human Protein Atlas [tissue]ENSG00000223914-LINC02471 [tissue]
Protein Interaction databases
FunCoupENSG00000223914
BioGRIDLINC02471
STRING (EMBL)LINC02471
ZODIACLINC02471
Ontologies - Pathways
Huge Navigator LINC02471 [HugePedia]
snp3D : Map Gene to Disease105369734
BioCentury BCIQLINC02471
ClinGenLINC02471
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105369734
Clinical trialLINC02471
Miscellaneous
canSAR (ICR)LINC02471 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02471
EVEXLINC02471
GoPubMedLINC02471
iHOPLINC02471
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:57:54 CEST 2018
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