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LINC02472 (long intergenic non-protein coding RNA 2472)

Identity

Other alias-
HGNC (Hugo) LINC02472
LocusID (NCBI) 105374561
Atlas_Id 79345
Location 4p15.1  [Link to chromosome band 4p15]
Location_base_pair Starts at 29214292 and ends at 29221161 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC02472   53411
Cards
Entrez_Gene (NCBI)LINC02472  105374561  long intergenic non-protein coding RNA 2472
Aliases
GeneCards (Weizmann)LINC02472
Ensembl hg19 (Hinxton)ENSG00000248338 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000248338 [Gene_View]  ENSG00000248338 [Sequence]  chr4:29214292-29221161 [Contig_View]  LINC02472 [Vega]
ICGC DataPortalENSG00000248338
TCGA cBioPortalLINC02472
AceView (NCBI)LINC02472
Genatlas (Paris)LINC02472
WikiGenes105374561
SOURCE (Princeton)LINC02472
Genetics Home Reference (NIH)LINC02472
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02472  -     chr4:29214292-29221161 +  4p15.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02472  -     4p15.1   [Description]    (hg19-Feb_2009)
EnsemblLINC02472 - 4p15.1 [CytoView hg19]  LINC02472 - 4p15.1 [CytoView hg38]
Mapping of homologs : NCBILINC02472 [Mapview hg19]  LINC02472 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI806835 BX112381
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02472
Cluster EST : UnigeneHs.738280 [ NCBI ]
CGAP (NCI)Hs.738280
Alternative Splicing GalleryENSG00000248338
Gene ExpressionLINC02472 [ NCBI-GEO ]   LINC02472 [ EBI - ARRAY_EXPRESS ]   LINC02472 [ SEEK ]   LINC02472 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02472 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105374561
GTEX Portal (Tissue expression)LINC02472
Human Protein AtlasENSG00000248338-LINC02472 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02472
DMDM Disease mutations105374561
Blocks (Seattle)LINC02472
Human Protein Atlas [tissue]ENSG00000248338-LINC02472 [tissue]
Protein Interaction databases
FunCoupENSG00000248338
BioGRIDLINC02472
STRING (EMBL)LINC02472
ZODIACLINC02472
Ontologies - Pathways
Huge Navigator LINC02472 [HugePedia]
snp3D : Map Gene to Disease105374561
BioCentury BCIQLINC02472
ClinGenLINC02472
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105374561
Clinical trialLINC02472
Miscellaneous
canSAR (ICR)LINC02472 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02472
EVEXLINC02472
GoPubMedLINC02472
iHOPLINC02472
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:57:54 CEST 2018

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