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LINC02475 (long intergenic non-protein coding RNA 2475)

Identity

Alias_symbol (synonym)LVCAT1
Other alias
HGNC (Hugo) LINC02475
LocusID (NCBI) 100506827
Atlas_Id 79887
Location 4p13  [Link to chromosome band 4p13]
Location_base_pair Starts at 44017062 and ends at 44022061 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02475   53418
Cards
Entrez_Gene (NCBI)LINC02475  100506827  long intergenic non-protein coding RNA 2475
AliasesLVCAT1
GeneCards (Weizmann)LINC02475
Ensembl hg19 (Hinxton)ENSG00000251350 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000251350 [Gene_View]  ENSG00000251350 [Sequence]  chr4:44017062-44022061 [Contig_View]  LINC02475 [Vega]
ICGC DataPortalENSG00000251350
TCGA cBioPortalLINC02475
AceView (NCBI)LINC02475
Genatlas (Paris)LINC02475
WikiGenes100506827
SOURCE (Princeton)LINC02475
Genetics Home Reference (NIH)LINC02475
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02475  -     chr4:44017062-44022061 +  4p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02475  -     4p13   [Description]    (hg19-Feb_2009)
EnsemblLINC02475 - 4p13 [CytoView hg19]  LINC02475 - 4p13 [CytoView hg38]
Mapping of homologs : NCBILINC02475 [Mapview hg19]  LINC02475 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL038572 AL038573 BC042992 BU569738
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02475
Cluster EST : UnigeneHs.156197 [ NCBI ]
CGAP (NCI)Hs.156197
Alternative Splicing GalleryENSG00000251350
Gene ExpressionLINC02475 [ NCBI-GEO ]   LINC02475 [ EBI - ARRAY_EXPRESS ]   LINC02475 [ SEEK ]   LINC02475 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02475 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100506827
GTEX Portal (Tissue expression)LINC02475
Human Protein AtlasENSG00000251350-LINC02475 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02475
DMDM Disease mutations100506827
Blocks (Seattle)LINC02475
Human Protein Atlas [tissue]ENSG00000251350-LINC02475 [tissue]
Protein Interaction databases
FunCoupENSG00000251350
BioGRIDLINC02475
STRING (EMBL)LINC02475
ZODIACLINC02475
Ontologies - Pathways
Huge Navigator LINC02475 [HugePedia]
snp3D : Map Gene to Disease100506827
BioCentury BCIQLINC02475
ClinGenLINC02475
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100506827
Clinical trialLINC02475
Miscellaneous
canSAR (ICR)LINC02475 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02475
EVEXLINC02475
GoPubMedLINC02475
iHOPLINC02475
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:57:54 CEST 2018

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