Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC02479 (long intergenic non-protein coding RNA 2479)

Identity

Other alias-
HGNC (Hugo) LINC02479
LocusID (NCBI) 105377420
Atlas_Id 79683
Location 4q28.3  [Link to chromosome band 4q28]
Location_base_pair Starts at 130376361 and ends at 130388071 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC02479   53453
Cards
Entrez_Gene (NCBI)LINC02479  105377420  long intergenic non-protein coding RNA 2479
Aliases
GeneCards (Weizmann)LINC02479
Ensembl hg19 (Hinxton)ENSG00000251326 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000251326 [Gene_View]  ENSG00000251326 [Sequence]  chr4:130376361-130388071 [Contig_View]  LINC02479 [Vega]
ICGC DataPortalENSG00000251326
TCGA cBioPortalLINC02479
AceView (NCBI)LINC02479
Genatlas (Paris)LINC02479
WikiGenes105377420
SOURCE (Princeton)LINC02479
Genetics Home Reference (NIH)LINC02479
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02479  -     chr4:130376361-130388071 +  4q28.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02479  -     4q28.3   [Description]    (hg19-Feb_2009)
EnsemblLINC02479 - 4q28.3 [CytoView hg19]  LINC02479 - 4q28.3 [CytoView hg38]
Mapping of homologs : NCBILINC02479 [Mapview hg19]  LINC02479 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02479
Alternative Splicing GalleryENSG00000251326
Gene ExpressionLINC02479 [ NCBI-GEO ]   LINC02479 [ EBI - ARRAY_EXPRESS ]   LINC02479 [ SEEK ]   LINC02479 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02479 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105377420
GTEX Portal (Tissue expression)LINC02479
Human Protein AtlasENSG00000251326-LINC02479 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02479
DMDM Disease mutations105377420
Blocks (Seattle)LINC02479
Human Protein Atlas [tissue]ENSG00000251326-LINC02479 [tissue]
Protein Interaction databases
FunCoupENSG00000251326
BioGRIDLINC02479
STRING (EMBL)LINC02479
ZODIACLINC02479
Ontologies - Pathways
Huge Navigator LINC02479 [HugePedia]
snp3D : Map Gene to Disease105377420
BioCentury BCIQLINC02479
ClinGenLINC02479
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105377420
Clinical trialLINC02479
Miscellaneous
canSAR (ICR)LINC02479 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02479
EVEXLINC02479
GoPubMedLINC02479
iHOPLINC02479
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:57:55 CEST 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.