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LINC02485 (long intergenic non-protein coding RNA 2485)

Identity

Other alias-
HGNC (Hugo) LINC02485
LocusID (NCBI) 105377439
Atlas_Id 80194
Location 4q28.3  [Link to chromosome band 4q28]
Location_base_pair Starts at 135113085 and ends at 135123559 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC02485   53460
Cards
Entrez_Gene (NCBI)LINC02485  105377439  long intergenic non-protein coding RNA 2485
Aliases
GeneCards (Weizmann)LINC02485
Ensembl hg19 (Hinxton)ENSG00000248456 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000248456 [Gene_View]  ENSG00000248456 [Sequence]  chr4:135113085-135123559 [Contig_View]  LINC02485 [Vega]
ICGC DataPortalENSG00000248456
TCGA cBioPortalLINC02485
AceView (NCBI)LINC02485
Genatlas (Paris)LINC02485
WikiGenes105377439
SOURCE (Princeton)LINC02485
Genetics Home Reference (NIH)LINC02485
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02485  -     chr4:135113085-135123559 -  4q28.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02485  -     4q28.3   [Description]    (hg19-Feb_2009)
EnsemblLINC02485 - 4q28.3 [CytoView hg19]  LINC02485 - 4q28.3 [CytoView hg38]
Mapping of homologs : NCBILINC02485 [Mapview hg19]  LINC02485 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BF239155 BG527530
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02485
Cluster EST : UnigeneHs.570727 [ NCBI ]
CGAP (NCI)Hs.570727
Alternative Splicing GalleryENSG00000248456
Gene ExpressionLINC02485 [ NCBI-GEO ]   LINC02485 [ EBI - ARRAY_EXPRESS ]   LINC02485 [ SEEK ]   LINC02485 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02485 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105377439
GTEX Portal (Tissue expression)LINC02485
Human Protein AtlasENSG00000248456-LINC02485 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02485
DMDM Disease mutations105377439
Blocks (Seattle)LINC02485
Human Protein Atlas [tissue]ENSG00000248456-LINC02485 [tissue]
Protein Interaction databases
FunCoupENSG00000248456
BioGRIDLINC02485
STRING (EMBL)LINC02485
ZODIACLINC02485
Ontologies - Pathways
Huge Navigator LINC02485 [HugePedia]
snp3D : Map Gene to Disease105377439
BioCentury BCIQLINC02485
ClinGenLINC02485
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105377439
Clinical trialLINC02485
Miscellaneous
canSAR (ICR)LINC02485 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02485
EVEXLINC02485
GoPubMedLINC02485
iHOPLINC02485
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:57:56 CEST 2018

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