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LINC02500 (long intergenic non-protein coding RNA 2500)

Identity

Alias (NCBI)-
HGNC (Hugo) LINC02500
LocusID (NCBI) 101928679
Atlas_Id 80309
Location 4q34.3  [Link to chromosome band 4q34]
Location_base_pair Starts at 181261016 and ends at 181265029 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC02500   53488
Cards
Entrez_Gene (NCBI)LINC02500  101928679  long intergenic non-protein coding RNA 2500
Aliases
GeneCards (Weizmann)LINC02500
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr4:181261016-181265029 [Contig_View]  LINC02500 [Vega]
TCGA cBioPortalLINC02500
AceView (NCBI)LINC02500
Genatlas (Paris)LINC02500
WikiGenes101928679
SOURCE (Princeton)LINC02500
Genetics Home Reference (NIH)LINC02500
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02500  -     chr4:181261016-181265029 -  4q34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02500  -     4q34.3   [Description]    (hg19-Feb_2009)
GoldenPathLINC02500 - 4q34.3 [CytoView hg19]  LINC02500 - 4q34.3 [CytoView hg38]
genome Data Viewer NCBILINC02500 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BG213576 BX108427
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02500
Gene ExpressionLINC02500 [ NCBI-GEO ]   LINC02500 [ EBI - ARRAY_EXPRESS ]   LINC02500 [ SEEK ]   LINC02500 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02500 [ Firebrowse - Broad ]
GenevisibleExpression of LINC02500 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)101928679
GTEX Portal (Tissue expression)LINC02500
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02500
DMDM Disease mutations101928679
Blocks (Seattle)LINC02500
Protein Interaction databases
BioGRIDLINC02500
STRING (EMBL)LINC02500
ZODIACLINC02500
Ontologies - Pathways
Huge Navigator LINC02500 [HugePedia]
snp3D : Map Gene to Disease101928679
BioCentury BCIQLINC02500
ClinGenLINC02500
Clinical trials, drugs, therapy
Protein Interactions : CTD101928679
Clinical trialLINC02500
Miscellaneous
canSAR (ICR)LINC02500 (select the gene name)
HarmonizomeLINC02500
DataMed IndexLINC02500
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02500
EVEXLINC02500
GoPubMedLINC02500
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Aug 22 19:19:15 CEST 2020

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