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LINC02501 (long intergenic non-protein coding RNA 2501)

Identity

Alias (NCBI)-
HGNC (Hugo) LINC02501
LocusID (NCBI) 105374565
Atlas_Id 80384
Location 4p15.1  [Link to chromosome band 4p15]
Location_base_pair Starts at 31506544 and ends at 31557752 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC02501   53489
Cards
Entrez_Gene (NCBI)LINC02501  105374565  long intergenic non-protein coding RNA 2501
Aliases
GeneCards (Weizmann)LINC02501
Ensembl hg19 (Hinxton)ENSG00000249882 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000249882 [Gene_View]  ENSG00000249882 [Sequence]  chr4:31506544-31557752 [Contig_View]  LINC02501 [Vega]
ICGC DataPortalENSG00000249882
TCGA cBioPortalLINC02501
AceView (NCBI)LINC02501
Genatlas (Paris)LINC02501
WikiGenes105374565
SOURCE (Princeton)LINC02501
Genetics Home Reference (NIH)LINC02501
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02501  -     chr4:31506544-31557752 +  4p15.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02501  -     4p15.1   [Description]    (hg19-Feb_2009)
GoldenPathLINC02501 - 4p15.1 [CytoView hg19]  LINC02501 - 4p15.1 [CytoView hg38]
ImmunoBaseENSG00000249882
genome Data Viewer NCBILINC02501 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AW665795 BX099393
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02501
Alternative Splicing GalleryENSG00000249882
Gene ExpressionLINC02501 [ NCBI-GEO ]   LINC02501 [ EBI - ARRAY_EXPRESS ]   LINC02501 [ SEEK ]   LINC02501 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02501 [ Firebrowse - Broad ]
GenevisibleExpression of LINC02501 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)105374565
GTEX Portal (Tissue expression)LINC02501
Human Protein AtlasENSG00000249882-LINC02501 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02501
DMDM Disease mutations105374565
Blocks (Seattle)LINC02501
Human Protein Atlas [tissue]ENSG00000249882-LINC02501 [tissue]
Protein Interaction databases
FunCoupENSG00000249882
BioGRIDLINC02501
STRING (EMBL)LINC02501
ZODIACLINC02501
Ontologies - Pathways
Huge Navigator LINC02501 [HugePedia]
snp3D : Map Gene to Disease105374565
BioCentury BCIQLINC02501
ClinGenLINC02501
Clinical trials, drugs, therapy
Protein Interactions : CTD105374565
Clinical trialLINC02501
Miscellaneous
canSAR (ICR)LINC02501 (select the gene name)
HarmonizomeLINC02501
DataMed IndexLINC02501
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02501
EVEXLINC02501
GoPubMedLINC02501
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Aug 22 19:19:16 CEST 2020

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