Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC02506 (long intergenic non-protein coding RNA 2506)

Identity

Other alias-
HGNC (Hugo) LINC02506
LocusID (NCBI) 102723828
Atlas_Id 79547
Location 4p15.1  [Link to chromosome band 4p15]
Location_base_pair Starts at 31997379 and ends at 32155406 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC02506   53495
Cards
Entrez_Gene (NCBI)LINC02506  102723828  long intergenic non-protein coding RNA 2506
Aliases
GeneCards (Weizmann)LINC02506
Ensembl hg19 (Hinxton)ENSG00000251129 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000251129 [Gene_View]  ENSG00000251129 [Sequence]  chr4:31997379-32155406 [Contig_View]  LINC02506 [Vega]
ICGC DataPortalENSG00000251129
TCGA cBioPortalLINC02506
AceView (NCBI)LINC02506
Genatlas (Paris)LINC02506
WikiGenes102723828
SOURCE (Princeton)LINC02506
Genetics Home Reference (NIH)LINC02506
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02506  -     chr4:31997379-32155406 +  4p15.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02506  -     4p15.1   [Description]    (hg19-Feb_2009)
EnsemblLINC02506 - 4p15.1 [CytoView hg19]  LINC02506 - 4p15.1 [CytoView hg38]
Mapping of homologs : NCBILINC02506 [Mapview hg19]  LINC02506 [Mapview hg38]
Gene and transcription
Genbank (Entrez)CX756508
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02506
Cluster EST : UnigeneHs.575118 [ NCBI ]
CGAP (NCI)Hs.575118
Alternative Splicing GalleryENSG00000251129
Gene ExpressionLINC02506 [ NCBI-GEO ]   LINC02506 [ EBI - ARRAY_EXPRESS ]   LINC02506 [ SEEK ]   LINC02506 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02506 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)102723828
GTEX Portal (Tissue expression)LINC02506
Human Protein AtlasENSG00000251129-LINC02506 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02506
DMDM Disease mutations102723828
Blocks (Seattle)LINC02506
Human Protein Atlas [tissue]ENSG00000251129-LINC02506 [tissue]
Protein Interaction databases
FunCoupENSG00000251129
BioGRIDLINC02506
STRING (EMBL)LINC02506
ZODIACLINC02506
Ontologies - Pathways
Huge Navigator LINC02506 [HugePedia]
snp3D : Map Gene to Disease102723828
BioCentury BCIQLINC02506
ClinGenLINC02506
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102723828
Clinical trialLINC02506
Miscellaneous
canSAR (ICR)LINC02506 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02506
EVEXLINC02506
GoPubMedLINC02506
iHOPLINC02506
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:57:58 CEST 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.