Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC02517 (long intergenic non-protein coding RNA 2517)


Alias (NCBI)-
HGNC (Hugo) LINC02517
LocusID (NCBI) 105374374
Atlas_Id 80600
Location 4p16.1  [Link to chromosome band 4p16]
Location_base_pair Starts at 8320176 and ends at 8323965 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

HGNC (Hugo)LINC02517   53506
Entrez_Gene (NCBI)LINC02517    long intergenic non-protein coding RNA 2517
GeneCards (Weizmann)LINC02517
Ensembl hg19 (Hinxton)ENSG00000249145 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000249145 [Gene_View]  ENSG00000249145 [Sequence]  chr4:8320176-8323965 [Contig_View]  LINC02517 [Vega]
ICGC DataPortalENSG00000249145
TCGA cBioPortalLINC02517
AceView (NCBI)LINC02517
Genatlas (Paris)LINC02517
SOURCE (Princeton)LINC02517
Genetics Home Reference (NIH)LINC02517
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02517  -     chr4:8320176-8323965 +  4p16.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02517  -     4p16.1   [Description]    (hg19-Feb_2009)
GoldenPathLINC02517 - 4p16.1 [CytoView hg19]  LINC02517 - 4p16.1 [CytoView hg38]
genome Data Viewer NCBILINC02517 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AI252664 BG217250 BX096935
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02517
Alternative Splicing GalleryENSG00000249145
Gene ExpressionLINC02517 [ NCBI-GEO ]   LINC02517 [ EBI - ARRAY_EXPRESS ]   LINC02517 [ SEEK ]   LINC02517 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02517 [ Firebrowse - Broad ]
GenevisibleExpression of LINC02517 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)105374374
GTEX Portal (Tissue expression)LINC02517
Human Protein AtlasENSG00000249145-LINC02517 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02517
Blocks (Seattle)LINC02517
Human Protein Atlas [tissue]ENSG00000249145-LINC02517 [tissue]
Protein Interaction databases
Ontologies - Pathways
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 5 17:05:14 CET 2020

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us