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LINC02520 (long intergenic non-protein coding RNA 2520)

Identity

Other alias-
HGNC (Hugo) LINC02520
LocusID (NCBI) 100505530
Atlas_Id 79705
Location 6p21.2  [Link to chromosome band 6p21]
Location_base_pair Starts at 37507348 and ends at 37541390 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC02520   53511
Cards
Entrez_Gene (NCBI)LINC02520  100505530  long intergenic non-protein coding RNA 2520
Aliases
GeneCards (Weizmann)LINC02520
Ensembl hg19 (Hinxton)ENSG00000204110 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204110 [Gene_View]  ENSG00000204110 [Sequence]  chr6:37507348-37541390 [Contig_View]  LINC02520 [Vega]
ICGC DataPortalENSG00000204110
TCGA cBioPortalLINC02520
AceView (NCBI)LINC02520
Genatlas (Paris)LINC02520
WikiGenes100505530
SOURCE (Princeton)LINC02520
Genetics Home Reference (NIH)LINC02520
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02520  -     chr6:37507348-37541390 +  6p21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02520  -     6p21.2   [Description]    (hg19-Feb_2009)
EnsemblLINC02520 - 6p21.2 [CytoView hg19]  LINC02520 - 6p21.2 [CytoView hg38]
Mapping of homologs : NCBILINC02520 [Mapview hg19]  LINC02520 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK127725 BQ002426
RefSeq transcript (Entrez)NM_001039791
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02520
Cluster EST : UnigeneHs.582978 [ NCBI ]
CGAP (NCI)Hs.582978
Alternative Splicing GalleryENSG00000204110
Gene ExpressionLINC02520 [ NCBI-GEO ]   LINC02520 [ EBI - ARRAY_EXPRESS ]   LINC02520 [ SEEK ]   LINC02520 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02520 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100505530
GTEX Portal (Tissue expression)LINC02520
Human Protein AtlasENSG00000204110-LINC02520 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZS52   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZS52  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZS52
Splice isoforms : SwissVarQ6ZS52
PhosPhoSitePlusQ6ZS52
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02520
DMDM Disease mutations100505530
Blocks (Seattle)LINC02520
SuperfamilyQ6ZS52
Human Protein Atlas [tissue]ENSG00000204110-LINC02520 [tissue]
Peptide AtlasQ6ZS52
Protein Interaction databases
DIP (DOE-UCLA)Q6ZS52
IntAct (EBI)Q6ZS52
FunCoupENSG00000204110
BioGRIDLINC02520
STRING (EMBL)LINC02520
ZODIACLINC02520
Ontologies - Pathways
QuickGOQ6ZS52
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC02520
Atlas of Cancer Signalling NetworkLINC02520
Wikipedia pathwaysLINC02520
Orthology - Evolution
OrthoDB100505530
GeneTree (enSembl)ENSG00000204110
Phylogenetic Trees/Animal Genes : TreeFamLINC02520
HOVERGENQ6ZS52
HOGENOMQ6ZS52
Homologs : HomoloGeneLINC02520
Homology/Alignments : Family Browser (UCSC)LINC02520
Gene fusions - Rearrangements
Fusion : QuiverLINC02520
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC02520 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC02520
dbVarLINC02520
ClinVarLINC02520
1000_GenomesLINC02520 
Exome Variant ServerLINC02520
ExAC (Exome Aggregation Consortium)ENSG00000204110
GNOMAD BrowserENSG00000204110
Varsome BrowserLINC02520
Genetic variants : HAPMAP100505530
Genomic Variants (DGV)LINC02520 [DGVbeta]
DECIPHERLINC02520 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC02520 
Mutations
ICGC Data PortalLINC02520 
TCGA Data PortalLINC02520 
Broad Tumor PortalLINC02520
OASIS PortalLINC02520 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC02520
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC02520
DgiDB (Drug Gene Interaction Database)LINC02520
DoCM (Curated mutations)LINC02520 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC02520 (select a term)
intoGenLINC02520
Cancer3DLINC02520(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLINC02520
MedgenLINC02520
Genetic Testing Registry LINC02520
NextProtQ6ZS52 [Medical]
TSGene100505530
GENETestsLINC02520
Target ValidationLINC02520
Huge Navigator LINC02520 [HugePedia]
snp3D : Map Gene to Disease100505530
BioCentury BCIQLINC02520
ClinGenLINC02520
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100505530
Clinical trialLINC02520
Miscellaneous
canSAR (ICR)LINC02520 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02520
EVEXLINC02520
GoPubMedLINC02520
iHOPLINC02520
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:57:59 CEST 2018

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