Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC02530 (long intergenic non-protein coding RNA 2530)

Identity

Other alias-
HGNC (Hugo) LINC02530
LocusID (NCBI) 101928309
Atlas_Id 79370
Location 6p24.1  [Link to chromosome band 6p24]
Location_base_pair Starts at 12582768 and ends at 12585404 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC02530   53556
Cards
Entrez_Gene (NCBI)LINC02530  101928309  long intergenic non-protein coding RNA 2530
Aliases
GeneCards (Weizmann)LINC02530
Ensembl hg19 (Hinxton)ENSG00000234015 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000234015 [Gene_View]  ENSG00000234015 [Sequence]  chr6:12582768-12585404 [Contig_View]  LINC02530 [Vega]
ICGC DataPortalENSG00000234015
TCGA cBioPortalLINC02530
AceView (NCBI)LINC02530
Genatlas (Paris)LINC02530
WikiGenes101928309
SOURCE (Princeton)LINC02530
Genetics Home Reference (NIH)LINC02530
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02530  -     chr6:12582768-12585404 -  6p24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02530  -     6p24.1   [Description]    (hg19-Feb_2009)
EnsemblLINC02530 - 6p24.1 [CytoView hg19]  LINC02530 - 6p24.1 [CytoView hg38]
Mapping of homologs : NCBILINC02530 [Mapview hg19]  LINC02530 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC042564
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02530
Cluster EST : UnigeneHs.639414 [ NCBI ]
CGAP (NCI)Hs.639414
Alternative Splicing GalleryENSG00000234015
Gene ExpressionLINC02530 [ NCBI-GEO ]   LINC02530 [ EBI - ARRAY_EXPRESS ]   LINC02530 [ SEEK ]   LINC02530 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02530 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101928309
GTEX Portal (Tissue expression)LINC02530
Human Protein AtlasENSG00000234015-LINC02530 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02530
DMDM Disease mutations101928309
Blocks (Seattle)LINC02530
Human Protein Atlas [tissue]ENSG00000234015-LINC02530 [tissue]
Protein Interaction databases
FunCoupENSG00000234015
BioGRIDLINC02530
STRING (EMBL)LINC02530
ZODIACLINC02530
Ontologies - Pathways
Huge Navigator LINC02530 [HugePedia]
snp3D : Map Gene to Disease101928309
BioCentury BCIQLINC02530
ClinGenLINC02530
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101928309
Clinical trialLINC02530
Miscellaneous
canSAR (ICR)LINC02530 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02530
EVEXLINC02530
GoPubMedLINC02530
iHOPLINC02530
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:58:00 CEST 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.