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LINC02533 (long intergenic non-protein coding RNA 2533)

Identity

Other alias-
HGNC (Hugo) LINC02533
LocusID (NCBI) 105374895
Atlas_Id 80231
Location 6p25.1  [Link to chromosome band 6p25]
Location_base_pair Starts at 4491807 and ends at 4495769 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC02533   53566
Cards
Entrez_Gene (NCBI)LINC02533  105374895  long intergenic non-protein coding RNA 2533
Aliases
GeneCards (Weizmann)LINC02533
Ensembl hg19 (Hinxton)ENSG00000260239 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000260239 [Gene_View]  ENSG00000260239 [Sequence]  chr6:4491807-4495769 [Contig_View]  LINC02533 [Vega]
ICGC DataPortalENSG00000260239
TCGA cBioPortalLINC02533
AceView (NCBI)LINC02533
Genatlas (Paris)LINC02533
WikiGenes105374895
SOURCE (Princeton)LINC02533
Genetics Home Reference (NIH)LINC02533
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02533  -     chr6:4491807-4495769 +  6p25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02533  -     6p25.1   [Description]    (hg19-Feb_2009)
EnsemblLINC02533 - 6p25.1 [CytoView hg19]  LINC02533 - 6p25.1 [CytoView hg38]
Mapping of homologs : NCBILINC02533 [Mapview hg19]  LINC02533 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK092525 BF376889 DA839427
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02533
Cluster EST : UnigeneHs.736129 [ NCBI ]
CGAP (NCI)Hs.736129
Alternative Splicing GalleryENSG00000260239
Gene ExpressionLINC02533 [ NCBI-GEO ]   LINC02533 [ EBI - ARRAY_EXPRESS ]   LINC02533 [ SEEK ]   LINC02533 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02533 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105374895
GTEX Portal (Tissue expression)LINC02533
Human Protein AtlasENSG00000260239-LINC02533 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02533
DMDM Disease mutations105374895
Blocks (Seattle)LINC02533
Human Protein Atlas [tissue]ENSG00000260239-LINC02533 [tissue]
Protein Interaction databases
FunCoupENSG00000260239
BioGRIDLINC02533
STRING (EMBL)LINC02533
ZODIACLINC02533
Ontologies - Pathways
Huge Navigator LINC02533 [HugePedia]
snp3D : Map Gene to Disease105374895
BioCentury BCIQLINC02533
ClinGenLINC02533
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105374895
Clinical trialLINC02533
Miscellaneous
canSAR (ICR)LINC02533 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02533
EVEXLINC02533
GoPubMedLINC02533
iHOPLINC02533
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:58:01 CEST 2018

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