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LINC02534 (long intergenic non-protein coding RNA 2534)

Identity

Other alias-
HGNC (Hugo) LINC02534
LocusID (NCBI) 105377962
Atlas_Id 79093
Location 6q22.1  [Link to chromosome band 6q22]
Location_base_pair Starts at 115633542 and ends at 115643835 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC02534   53567
Cards
Entrez_Gene (NCBI)LINC02534  105377962  long intergenic non-protein coding RNA 2534
Aliases
GeneCards (Weizmann)LINC02534
Ensembl hg19 (Hinxton)ENSG00000228777 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000228777 [Gene_View]  ENSG00000228777 [Sequence]  chr6:115633542-115643835 [Contig_View]  LINC02534 [Vega]
ICGC DataPortalENSG00000228777
TCGA cBioPortalLINC02534
AceView (NCBI)LINC02534
Genatlas (Paris)LINC02534
WikiGenes105377962
SOURCE (Princeton)LINC02534
Genetics Home Reference (NIH)LINC02534
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02534  -     chr6:115633542-115643835 -  6q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02534  -     6q22.1   [Description]    (hg19-Feb_2009)
EnsemblLINC02534 - 6q22.1 [CytoView hg19]  LINC02534 - 6q22.1 [CytoView hg38]
Mapping of homologs : NCBILINC02534 [Mapview hg19]  LINC02534 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI215976 CR741031
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02534
Cluster EST : UnigeneHs.571066 [ NCBI ]
CGAP (NCI)Hs.571066
Alternative Splicing GalleryENSG00000228777
Gene ExpressionLINC02534 [ NCBI-GEO ]   LINC02534 [ EBI - ARRAY_EXPRESS ]   LINC02534 [ SEEK ]   LINC02534 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02534 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105377962
GTEX Portal (Tissue expression)LINC02534
Human Protein AtlasENSG00000228777-LINC02534 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02534
DMDM Disease mutations105377962
Blocks (Seattle)LINC02534
Human Protein Atlas [tissue]ENSG00000228777-LINC02534 [tissue]
Protein Interaction databases
FunCoupENSG00000228777
BioGRIDLINC02534
STRING (EMBL)LINC02534
ZODIACLINC02534
Ontologies - Pathways
Huge Navigator LINC02534 [HugePedia]
snp3D : Map Gene to Disease105377962
BioCentury BCIQLINC02534
ClinGenLINC02534
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105377962
Clinical trialLINC02534
Miscellaneous
canSAR (ICR)LINC02534 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02534
EVEXLINC02534
GoPubMedLINC02534
iHOPLINC02534
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:58:01 CEST 2018

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