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LINC02538 (long intergenic non-protein coding RNA 2538)

Identity

Other alias-
HGNC (Hugo) LINC02538
LocusID (NCBI) 401286
Atlas_Id 79069
Location 6q27  [Link to chromosome band 6q27]
Location_base_pair Starts at 167666841 and ends at 167679223 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC02538   53571
Cards
Entrez_Gene (NCBI)LINC02538  401286  long intergenic non-protein coding RNA 2538
Aliases
GeneCards (Weizmann)LINC02538
Ensembl hg19 (Hinxton)ENSG00000272549 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000272549 [Gene_View]  ENSG00000272549 [Sequence]  chr6:167666841-167679223 [Contig_View]  LINC02538 [Vega]
ICGC DataPortalENSG00000272549
TCGA cBioPortalLINC02538
AceView (NCBI)LINC02538
Genatlas (Paris)LINC02538
WikiGenes401286
SOURCE (Princeton)LINC02538
Genetics Home Reference (NIH)LINC02538
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02538  -     chr6:167666841-167679223 -  6q27   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02538  -     6q27   [Description]    (hg19-Feb_2009)
EnsemblLINC02538 - 6q27 [CytoView hg19]  LINC02538 - 6q27 [CytoView hg38]
Mapping of homologs : NCBILINC02538 [Mapview hg19]  LINC02538 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK123853 AK127120
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02538
Cluster EST : UnigeneHs.487182 [ NCBI ]
CGAP (NCI)Hs.487182
Alternative Splicing GalleryENSG00000272549
Gene ExpressionLINC02538 [ NCBI-GEO ]   LINC02538 [ EBI - ARRAY_EXPRESS ]   LINC02538 [ SEEK ]   LINC02538 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02538 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)401286
GTEX Portal (Tissue expression)LINC02538
Human Protein AtlasENSG00000272549-LINC02538 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZSV7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZSV7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZSV7
Splice isoforms : SwissVarQ6ZSV7
PhosPhoSitePlusQ6ZSV7
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02538
DMDM Disease mutations401286
Blocks (Seattle)LINC02538
SuperfamilyQ6ZSV7
Human Protein Atlas [tissue]ENSG00000272549-LINC02538 [tissue]
Peptide AtlasQ6ZSV7
IPIIPI00401145   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZSV7
IntAct (EBI)Q6ZSV7
FunCoupENSG00000272549
BioGRIDLINC02538
STRING (EMBL)LINC02538
ZODIACLINC02538
Ontologies - Pathways
QuickGOQ6ZSV7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC02538
Atlas of Cancer Signalling NetworkLINC02538
Wikipedia pathwaysLINC02538
Orthology - Evolution
OrthoDB401286
GeneTree (enSembl)ENSG00000272549
Phylogenetic Trees/Animal Genes : TreeFamLINC02538
HOVERGENQ6ZSV7
HOGENOMQ6ZSV7
Homologs : HomoloGeneLINC02538
Homology/Alignments : Family Browser (UCSC)LINC02538
Gene fusions - Rearrangements
Fusion : QuiverLINC02538
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC02538 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC02538
dbVarLINC02538
ClinVarLINC02538
1000_GenomesLINC02538 
Exome Variant ServerLINC02538
ExAC (Exome Aggregation Consortium)ENSG00000272549
GNOMAD BrowserENSG00000272549
Varsome BrowserLINC02538
Genetic variants : HAPMAP401286
Genomic Variants (DGV)LINC02538 [DGVbeta]
DECIPHERLINC02538 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC02538 
Mutations
ICGC Data PortalLINC02538 
TCGA Data PortalLINC02538 
Broad Tumor PortalLINC02538
OASIS PortalLINC02538 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC02538
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC02538
DgiDB (Drug Gene Interaction Database)LINC02538
DoCM (Curated mutations)LINC02538 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC02538 (select a term)
intoGenLINC02538
Cancer3DLINC02538(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLINC02538
MedgenLINC02538
Genetic Testing Registry LINC02538
NextProtQ6ZSV7 [Medical]
TSGene401286
GENETestsLINC02538
Target ValidationLINC02538
Huge Navigator LINC02538 [HugePedia]
snp3D : Map Gene to Disease401286
BioCentury BCIQLINC02538
ClinGenLINC02538
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401286
Clinical trialLINC02538
Miscellaneous
canSAR (ICR)LINC02538 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02538
EVEXLINC02538
GoPubMedLINC02538
iHOPLINC02538
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:58:01 CEST 2018

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