Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC02539 (long intergenic non-protein coding RNA 2539)

Identity

Other alias-
HGNC (Hugo) LINC02539
LocusID (NCBI) 100507406
Atlas_Id 78855
Location 6q23.3  [Link to chromosome band 6q23]
Location_base_pair Starts at 137730171 and ends at 137739037 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC02539   53572
Cards
Entrez_Gene (NCBI)LINC02539  100507406  long intergenic non-protein coding RNA 2539
Aliases
GeneCards (Weizmann)LINC02539
Ensembl hg19 (Hinxton)ENSG00000234956 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000234956 [Gene_View]  ENSG00000234956 [Sequence]  chr6:137730171-137739037 [Contig_View]  LINC02539 [Vega]
ICGC DataPortalENSG00000234956
TCGA cBioPortalLINC02539
AceView (NCBI)LINC02539
Genatlas (Paris)LINC02539
WikiGenes100507406
SOURCE (Princeton)LINC02539
Genetics Home Reference (NIH)LINC02539
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02539  -     chr6:137730171-137739037 -  6q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02539  -     6q23.3   [Description]    (hg19-Feb_2009)
EnsemblLINC02539 - 6q23.3 [CytoView hg19]  LINC02539 - 6q23.3 [CytoView hg38]
Mapping of homologs : NCBILINC02539 [Mapview hg19]  LINC02539 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BF970945 BQ011120 N41668
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02539
Cluster EST : UnigeneHs.556703 [ NCBI ]
CGAP (NCI)Hs.556703
Alternative Splicing GalleryENSG00000234956
Gene ExpressionLINC02539 [ NCBI-GEO ]   LINC02539 [ EBI - ARRAY_EXPRESS ]   LINC02539 [ SEEK ]   LINC02539 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02539 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100507406
GTEX Portal (Tissue expression)LINC02539
Human Protein AtlasENSG00000234956-LINC02539 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02539
DMDM Disease mutations100507406
Blocks (Seattle)LINC02539
Human Protein Atlas [tissue]ENSG00000234956-LINC02539 [tissue]
Protein Interaction databases
FunCoupENSG00000234956
BioGRIDLINC02539
STRING (EMBL)LINC02539
ZODIACLINC02539
Ontologies - Pathways
Huge Navigator LINC02539 [HugePedia]
snp3D : Map Gene to Disease100507406
BioCentury BCIQLINC02539
ClinGenLINC02539
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100507406
Clinical trialLINC02539
Miscellaneous
canSAR (ICR)LINC02539 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02539
EVEXLINC02539
GoPubMedLINC02539
iHOPLINC02539
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:58:02 CEST 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.