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LINC02540 (long intergenic non-protein coding RNA 2540)

Identity

Alias (NCBI)-
HGNC (Hugo) LINC02540
LocusID (NCBI) 105377860
Atlas_Id 80331
Location 6q14.1  [Link to chromosome band 6q14]
Location_base_pair Starts at 76522449 and ends at 76593623 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC02540   53573
Cards
Entrez_Gene (NCBI)LINC02540  105377860  long intergenic non-protein coding RNA 2540
Aliases
GeneCards (Weizmann)LINC02540
Ensembl hg19 (Hinxton)ENSG00000236635 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000236635 [Gene_View]  ENSG00000236635 [Sequence]  chr6:76522449-76593623 [Contig_View]  LINC02540 [Vega]
ICGC DataPortalENSG00000236635
TCGA cBioPortalLINC02540
AceView (NCBI)LINC02540
Genatlas (Paris)LINC02540
WikiGenes105377860
SOURCE (Princeton)LINC02540
Genetics Home Reference (NIH)LINC02540
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02540  -     chr6:76522449-76593623 -  6q14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02540  -     6q14.1   [Description]    (hg19-Feb_2009)
GoldenPathLINC02540 - 6q14.1 [CytoView hg19]  LINC02540 - 6q14.1 [CytoView hg38]
ImmunoBaseENSG00000236635
genome Data Viewer NCBILINC02540 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AW303563
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02540
Alternative Splicing GalleryENSG00000236635
Gene ExpressionLINC02540 [ NCBI-GEO ]   LINC02540 [ EBI - ARRAY_EXPRESS ]   LINC02540 [ SEEK ]   LINC02540 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02540 [ Firebrowse - Broad ]
GenevisibleExpression of LINC02540 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)105377860
GTEX Portal (Tissue expression)LINC02540
Human Protein AtlasENSG00000236635-LINC02540 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02540
DMDM Disease mutations105377860
Blocks (Seattle)LINC02540
Human Protein Atlas [tissue]ENSG00000236635-LINC02540 [tissue]
Protein Interaction databases
FunCoupENSG00000236635
BioGRIDLINC02540
STRING (EMBL)LINC02540
ZODIACLINC02540
Ontologies - Pathways
Huge Navigator LINC02540 [HugePedia]
snp3D : Map Gene to Disease105377860
BioCentury BCIQLINC02540
ClinGenLINC02540
Clinical trials, drugs, therapy
Protein Interactions : CTD105377860
Clinical trialLINC02540
Miscellaneous
canSAR (ICR)LINC02540 (select the gene name)
HarmonizomeLINC02540
DataMed IndexLINC02540
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02540
EVEXLINC02540
GoPubMedLINC02540
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Aug 22 19:19:20 CEST 2020

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