Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC02541 (long intergenic non-protein coding RNA 2541)

Identity

Other alias-
HGNC (Hugo) LINC02541
LocusID (NCBI) 101927686
Atlas_Id 80085
Location 6q21  [Link to chromosome band 6q21]
Location_base_pair Starts at 113623535 and ends at 113650075 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC02541   53574
Cards
Entrez_Gene (NCBI)LINC02541  101927686  long intergenic non-protein coding RNA 2541
Aliases
GeneCards (Weizmann)LINC02541
Ensembl hg19 (Hinxton)ENSG00000230943 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000230943 [Gene_View]  ENSG00000230943 [Sequence]  chr6:113623535-113650075 [Contig_View]  LINC02541 [Vega]
ICGC DataPortalENSG00000230943
TCGA cBioPortalLINC02541
AceView (NCBI)LINC02541
Genatlas (Paris)LINC02541
WikiGenes101927686
SOURCE (Princeton)LINC02541
Genetics Home Reference (NIH)LINC02541
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02541  -     chr6:113623535-113650075 -  6q21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02541  -     6q21   [Description]    (hg19-Feb_2009)
EnsemblLINC02541 - 6q21 [CytoView hg19]  LINC02541 - 6q21 [CytoView hg38]
Mapping of homologs : NCBILINC02541 [Mapview hg19]  LINC02541 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AW630616 CN265119
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02541
Cluster EST : UnigeneHs.402044 [ NCBI ]
CGAP (NCI)Hs.402044
Alternative Splicing GalleryENSG00000230943
Gene ExpressionLINC02541 [ NCBI-GEO ]   LINC02541 [ EBI - ARRAY_EXPRESS ]   LINC02541 [ SEEK ]   LINC02541 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02541 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101927686
GTEX Portal (Tissue expression)LINC02541
Human Protein AtlasENSG00000230943-LINC02541 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02541
DMDM Disease mutations101927686
Blocks (Seattle)LINC02541
Human Protein Atlas [tissue]ENSG00000230943-LINC02541 [tissue]
Protein Interaction databases
FunCoupENSG00000230943
BioGRIDLINC02541
STRING (EMBL)LINC02541
ZODIACLINC02541
Ontologies - Pathways
Huge Navigator LINC02541 [HugePedia]
snp3D : Map Gene to Disease101927686
BioCentury BCIQLINC02541
ClinGenLINC02541
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101927686
Clinical trialLINC02541
Miscellaneous
canSAR (ICR)LINC02541 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02541
EVEXLINC02541
GoPubMedLINC02541
iHOPLINC02541
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:58:02 CEST 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.