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LINC02543 (long intergenic non-protein coding RNA 2543)

Identity

Other alias-
HGNC (Hugo) LINC02543
LocusID (NCBI) 101928406
Atlas_Id 79257
Location 6p22.3  [Link to chromosome band 6p22]
Location_base_pair Starts at 15994944 and ends at 16000490 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC02543   53577
Cards
Entrez_Gene (NCBI)LINC02543  101928406  long intergenic non-protein coding RNA 2543
Aliases
GeneCards (Weizmann)LINC02543
Ensembl hg19 (Hinxton)ENSG00000232947 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000232947 [Gene_View]  ENSG00000232947 [Sequence]  chr6:15994944-16000490 [Contig_View]  LINC02543 [Vega]
ICGC DataPortalENSG00000232947
TCGA cBioPortalLINC02543
AceView (NCBI)LINC02543
Genatlas (Paris)LINC02543
WikiGenes101928406
SOURCE (Princeton)LINC02543
Genetics Home Reference (NIH)LINC02543
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02543  -     chr6:15994944-16000490 +  6p22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02543  -     6p22.3   [Description]    (hg19-Feb_2009)
EnsemblLINC02543 - 6p22.3 [CytoView hg19]  LINC02543 - 6p22.3 [CytoView hg38]
Mapping of homologs : NCBILINC02543 [Mapview hg19]  LINC02543 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC044856
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02543
Cluster EST : UnigeneHs.434413 [ NCBI ]
CGAP (NCI)Hs.434413
Alternative Splicing GalleryENSG00000232947
Gene ExpressionLINC02543 [ NCBI-GEO ]   LINC02543 [ EBI - ARRAY_EXPRESS ]   LINC02543 [ SEEK ]   LINC02543 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02543 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101928406
GTEX Portal (Tissue expression)LINC02543
Human Protein AtlasENSG00000232947-LINC02543 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02543
DMDM Disease mutations101928406
Blocks (Seattle)LINC02543
Human Protein Atlas [tissue]ENSG00000232947-LINC02543 [tissue]
Protein Interaction databases
FunCoupENSG00000232947
BioGRIDLINC02543
STRING (EMBL)LINC02543
ZODIACLINC02543
Ontologies - Pathways
Huge Navigator LINC02543 [HugePedia]
snp3D : Map Gene to Disease101928406
BioCentury BCIQLINC02543
ClinGenLINC02543
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101928406
Clinical trialLINC02543
Miscellaneous
canSAR (ICR)LINC02543 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02543
EVEXLINC02543
GoPubMedLINC02543
iHOPLINC02543
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:58:02 CEST 2018

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