Atlas of Genetics and Cytogenetics in Oncology and Haematology

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LINC02545 (long intergenic non-protein coding RNA 2545)

Identity

Other alias-
HGNC (Hugo) LINC02545
LocusID (NCBI) 105376561
Atlas_Id 80555
Location 11p15.2  [Link to chromosome band 11p15]
Location_base_pair Starts at 13844863 and ends at 13870616 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)LINC02545   53580
Cards
Entrez_Gene (NCBI)LINC02545  105376561  long intergenic non-protein coding RNA 2545
Aliases
GeneCards (Weizmann)LINC02545
Ensembl hg19 (Hinxton)ENSG00000254930 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000254930 [Gene_View]  ENSG00000254930 [Sequence]  chr11:13844863-13870616 [Contig_View]  LINC02545 [Vega]
ICGC DataPortalENSG00000254930
TCGA cBioPortalLINC02545
AceView (NCBI)LINC02545
Genatlas (Paris)LINC02545
WikiGenes105376561
SOURCE (Princeton)LINC02545
Genetics Home Reference (NIH)LINC02545
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02545  -     chr11:13844863-13870616 -  11p15.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02545  -     11p15.2   [Description]    (hg19-Feb_2009)
GoldenPathLINC02545 - 11p15.2 [CytoView hg19]  LINC02545 - 11p15.2 [CytoView hg38]
ImmunoBaseENSG00000254930
Mapping of homologs : NCBILINC02545 [Mapview hg19]  LINC02545 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI041524
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02545
Cluster EST : UnigeneHs.512244 [ NCBI ]
CGAP (NCI)Hs.512244
Alternative Splicing GalleryENSG00000254930
Gene ExpressionLINC02545 [ NCBI-GEO ]   LINC02545 [ EBI - ARRAY_EXPRESS ]   LINC02545 [ SEEK ]   LINC02545 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02545 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105376561
GTEX Portal (Tissue expression)LINC02545
Human Protein AtlasENSG00000254930-LINC02545 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02545
DMDM Disease mutations105376561
Blocks (Seattle)LINC02545
Human Protein Atlas [tissue]ENSG00000254930-LINC02545 [tissue]
Protein Interaction databases
FunCoupENSG00000254930
BioGRIDLINC02545
STRING (EMBL)LINC02545
ZODIACLINC02545
Ontologies - Pathways
Huge Navigator LINC02545 [HugePedia]
snp3D : Map Gene to Disease105376561
BioCentury BCIQLINC02545
ClinGenLINC02545
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105376561
Clinical trialLINC02545
Miscellaneous
canSAR (ICR)LINC02545 (select the gene name)
DataMed IndexLINC02545
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02545
EVEXLINC02545
GoPubMedLINC02545
iHOPLINC02545
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 15:39:04 CEST 2019
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