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LINC02547 (long intergenic non-protein coding RNA 2547)

Identity

Other alias-
HGNC (Hugo) LINC02547
LocusID (NCBI) 105376554
Atlas_Id 79385
Location 11p15.3  [Link to chromosome band 11p15]
Location_base_pair Starts at 12030875 and ends at 12061785 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC02547   53582
Cards
Entrez_Gene (NCBI)LINC02547  105376554  long intergenic non-protein coding RNA 2547
Aliases
GeneCards (Weizmann)LINC02547
Ensembl hg19 (Hinxton)ENSG00000254486 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000254486 [Gene_View]  chr11:12030875-12061785 [Contig_View]  LINC02547 [Vega]
ICGC DataPortalENSG00000254486
TCGA cBioPortalLINC02547
AceView (NCBI)LINC02547
Genatlas (Paris)LINC02547
WikiGenes105376554
SOURCE (Princeton)LINC02547
Genetics Home Reference (NIH)LINC02547
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02547  -     chr11:12030875-12061785 +  11p15.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02547  -     11p15.3   [Description]    (hg19-Feb_2009)
EnsemblLINC02547 - 11p15.3 [CytoView hg19]  LINC02547 - 11p15.3 [CytoView hg38]
Mapping of homologs : NCBILINC02547 [Mapview hg19]  LINC02547 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK127718
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02547
Cluster EST : UnigeneHs.523483 [ NCBI ]
CGAP (NCI)Hs.523483
Alternative Splicing GalleryENSG00000254486
Gene ExpressionLINC02547 [ NCBI-GEO ]   LINC02547 [ EBI - ARRAY_EXPRESS ]   LINC02547 [ SEEK ]   LINC02547 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02547 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105376554
GTEX Portal (Tissue expression)LINC02547
Human Protein AtlasENSG00000254486-LINC02547 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02547
DMDM Disease mutations105376554
Blocks (Seattle)LINC02547
Human Protein Atlas [tissue]ENSG00000254486-LINC02547 [tissue]
Protein Interaction databases
FunCoupENSG00000254486
BioGRIDLINC02547
STRING (EMBL)LINC02547
ZODIACLINC02547
Ontologies - Pathways
Huge Navigator LINC02547 [HugePedia]
snp3D : Map Gene to Disease105376554
BioCentury BCIQLINC02547
ClinGenLINC02547
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105376554
Clinical trialLINC02547
Miscellaneous
canSAR (ICR)LINC02547 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02547
EVEXLINC02547
GoPubMedLINC02547
iHOPLINC02547
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:23:46 CET 2017

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