Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC02548 (long intergenic non-protein coding RNA 2548)


Alias (NCBI)-
HGNC (Hugo) LINC02548
LocusID (NCBI) 105376562
Atlas_Id 80452
Location 11p15.3  [Link to chromosome band 11p15]
Location_base_pair Starts at 13784386 and ends at 13848002 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

HGNC (Hugo)LINC02548   53583
Entrez_Gene (NCBI)LINC02548    long intergenic non-protein coding RNA 2548
GeneCards (Weizmann)LINC02548
Ensembl hg19 (Hinxton)ENSG00000255411 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000255411 [Gene_View]  ENSG00000255411 [Sequence]  chr11:13784386-13848002 [Contig_View]  LINC02548 [Vega]
ICGC DataPortalENSG00000255411
TCGA cBioPortalLINC02548
AceView (NCBI)LINC02548
Genatlas (Paris)LINC02548
SOURCE (Princeton)LINC02548
Genetics Home Reference (NIH)LINC02548
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02548  -     chr11:13784386-13848002 +  11p15.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02548  -     11p15.3   [Description]    (hg19-Feb_2009)
GoldenPathLINC02548 - 11p15.3 [CytoView hg19]  LINC02548 - 11p15.3 [CytoView hg38]
genome Data Viewer NCBILINC02548 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AA789240
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02548
Alternative Splicing GalleryENSG00000255411
Gene ExpressionLINC02548 [ NCBI-GEO ]   LINC02548 [ EBI - ARRAY_EXPRESS ]   LINC02548 [ SEEK ]   LINC02548 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02548 [ Firebrowse - Broad ]
GenevisibleExpression of LINC02548 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)105376562
GTEX Portal (Tissue expression)LINC02548
Human Protein AtlasENSG00000255411-LINC02548 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02548
Blocks (Seattle)LINC02548
Human Protein Atlas [tissue]ENSG00000255411-LINC02548 [tissue]
Protein Interaction databases
Ontologies - Pathways
GeneRIFsGene References Into Functions (Entrez)
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 5 17:05:20 CET 2020

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us