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LINC02549 (long intergenic non-protein coding RNA 2549)

Identity

Other alias-
HGNC (Hugo) LINC02549
LocusID (NCBI) 101928280
Atlas_Id 80220
Location 6q12  [Link to chromosome band 6q12]
Location_base_pair Starts at 68226970 and ends at 68329899 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC02549   53584
Cards
Entrez_Gene (NCBI)LINC02549  101928280  long intergenic non-protein coding RNA 2549
Aliases
GeneCards (Weizmann)LINC02549
Ensembl hg19 (Hinxton)ENSG00000226497 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000226497 [Gene_View]  ENSG00000226497 [Sequence]  chr6:68226970-68329899 [Contig_View]  LINC02549 [Vega]
ICGC DataPortalENSG00000226497
TCGA cBioPortalLINC02549
AceView (NCBI)LINC02549
Genatlas (Paris)LINC02549
WikiGenes101928280
SOURCE (Princeton)LINC02549
Genetics Home Reference (NIH)LINC02549
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02549  -     chr6:68226970-68329899 -  6q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02549  -     6q12   [Description]    (hg19-Feb_2009)
EnsemblLINC02549 - 6q12 [CytoView hg19]  LINC02549 - 6q12 [CytoView hg38]
Mapping of homologs : NCBILINC02549 [Mapview hg19]  LINC02549 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC031312
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02549
Cluster EST : UnigeneHs.544560 [ NCBI ]
CGAP (NCI)Hs.544560
Alternative Splicing GalleryENSG00000226497
Gene ExpressionLINC02549 [ NCBI-GEO ]   LINC02549 [ EBI - ARRAY_EXPRESS ]   LINC02549 [ SEEK ]   LINC02549 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02549 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101928280
GTEX Portal (Tissue expression)LINC02549
Human Protein AtlasENSG00000226497-LINC02549 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02549
DMDM Disease mutations101928280
Blocks (Seattle)LINC02549
Human Protein Atlas [tissue]ENSG00000226497-LINC02549 [tissue]
Protein Interaction databases
FunCoupENSG00000226497
BioGRIDLINC02549
STRING (EMBL)LINC02549
ZODIACLINC02549
Ontologies - Pathways
Huge Navigator LINC02549 [HugePedia]
snp3D : Map Gene to Disease101928280
BioCentury BCIQLINC02549
ClinGenLINC02549
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101928280
Clinical trialLINC02549
Miscellaneous
canSAR (ICR)LINC02549 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02549
EVEXLINC02549
GoPubMedLINC02549
iHOPLINC02549
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:58:03 CEST 2018

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