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LINC02552 (long intergenic non-protein coding RNA 2552)

Identity

Other alias-
HGNC (Hugo) LINC02552
LocusID (NCBI) 102723895
Atlas_Id 79284
Location 11q22.3  [Link to chromosome band 11q22]
Location_base_pair Starts at 104568489 and ends at 104609302 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC02552   53587
Cards
Entrez_Gene (NCBI)LINC02552  102723895  long intergenic non-protein coding RNA 2552
Aliases
GeneCards (Weizmann)LINC02552
Ensembl hg19 (Hinxton)ENSG00000256422 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000256422 [Gene_View]  chr11:104568489-104609302 [Contig_View]  LINC02552 [Vega]
ICGC DataPortalENSG00000256422
TCGA cBioPortalLINC02552
AceView (NCBI)LINC02552
Genatlas (Paris)LINC02552
WikiGenes102723895
SOURCE (Princeton)LINC02552
Genetics Home Reference (NIH)LINC02552
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02552  -     chr11:104568489-104609302 -  11q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02552  -     11q22.3   [Description]    (hg19-Feb_2009)
EnsemblLINC02552 - 11q22.3 [CytoView hg19]  LINC02552 - 11q22.3 [CytoView hg38]
Mapping of homologs : NCBILINC02552 [Mapview hg19]  LINC02552 [Mapview hg38]
Gene and transcription
Genbank (Entrez)DA109127 N63497
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02552
Cluster EST : UnigeneHs.48803 [ NCBI ]
CGAP (NCI)Hs.48803
Alternative Splicing GalleryENSG00000256422
Gene ExpressionLINC02552 [ NCBI-GEO ]   LINC02552 [ EBI - ARRAY_EXPRESS ]   LINC02552 [ SEEK ]   LINC02552 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02552 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)102723895
GTEX Portal (Tissue expression)LINC02552
Human Protein AtlasENSG00000256422-LINC02552 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02552
DMDM Disease mutations102723895
Blocks (Seattle)LINC02552
Human Protein Atlas [tissue]ENSG00000256422-LINC02552 [tissue]
Protein Interaction databases
FunCoupENSG00000256422
BioGRIDLINC02552
STRING (EMBL)LINC02552
ZODIACLINC02552
Ontologies - Pathways
Huge Navigator LINC02552 [HugePedia]
snp3D : Map Gene to Disease102723895
BioCentury BCIQLINC02552
ClinGenLINC02552
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102723895
Clinical trialLINC02552
Miscellaneous
canSAR (ICR)LINC02552 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02552
EVEXLINC02552
GoPubMedLINC02552
iHOPLINC02552
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:23:46 CET 2017

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