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LINC02562 (long intergenic non-protein coding RNA 2562)

Identity

Alias_symbol (synonym)RP11-44F21.5
Other alias-
HGNC (Hugo) LINC02562
LocusID (NCBI) 105377283
Atlas_Id 79153
Location 4q13.3  [Link to chromosome band 4q13]
Location_base_pair Starts at 75081926 and ends at 75082495 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC02562   53602
Cards
Entrez_Gene (NCBI)LINC02562  105377283  long intergenic non-protein coding RNA 2562
Aliases
GeneCards (Weizmann)LINC02562
Ensembl hg19 (Hinxton)ENSG00000260265 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000260265 [Gene_View]  ENSG00000260265 [Sequence]  chr4:75081926-75082495 [Contig_View]  LINC02562 [Vega]
ICGC DataPortalENSG00000260265
TCGA cBioPortalLINC02562
AceView (NCBI)LINC02562
Genatlas (Paris)LINC02562
WikiGenes105377283
SOURCE (Princeton)LINC02562
Genetics Home Reference (NIH)LINC02562
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02562  -     chr4:75081926-75082495 -  4q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02562  -     4q13.3   [Description]    (hg19-Feb_2009)
EnsemblLINC02562 - 4q13.3 [CytoView hg19]  LINC02562 - 4q13.3 [CytoView hg38]
Mapping of homologs : NCBILINC02562 [Mapview hg19]  LINC02562 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF086310 AI631657
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02562
Cluster EST : UnigeneHs.103159 [ NCBI ]
CGAP (NCI)Hs.103159
Alternative Splicing GalleryENSG00000260265
Gene ExpressionLINC02562 [ NCBI-GEO ]   LINC02562 [ EBI - ARRAY_EXPRESS ]   LINC02562 [ SEEK ]   LINC02562 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02562 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105377283
GTEX Portal (Tissue expression)LINC02562
Human Protein AtlasENSG00000260265-LINC02562 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02562
DMDM Disease mutations105377283
Blocks (Seattle)LINC02562
Human Protein Atlas [tissue]ENSG00000260265-LINC02562 [tissue]
Protein Interaction databases
FunCoupENSG00000260265
BioGRIDLINC02562
STRING (EMBL)LINC02562
ZODIACLINC02562
Ontologies - Pathways
Huge Navigator LINC02562 [HugePedia]
snp3D : Map Gene to Disease105377283
BioCentury BCIQLINC02562
ClinGenLINC02562
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105377283
Clinical trialLINC02562
Miscellaneous
canSAR (ICR)LINC02562 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02562
EVEXLINC02562
GoPubMedLINC02562
iHOPLINC02562
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:58:04 CEST 2018

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