Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC02570 (long intergenic non-protein coding RNA 2570)

Identity

Alias_symbol (synonym)XXbac-BPG27H4.8
Other alias-
HGNC (Hugo) LINC02570
LocusID (NCBI) 105375014
Atlas_Id 79880
Location 6p21.33  [Link to chromosome band 6p21]
Location_base_pair Starts at 30839529 and ends at 30848159 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC02570   39766
Cards
Entrez_Gene (NCBI)LINC02570  105375014  long intergenic non-protein coding RNA 2570
Aliases
GeneCards (Weizmann)LINC02570
Ensembl hg19 (Hinxton)ENSG00000237923 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000237923 [Gene_View]  ENSG00000237923 [Sequence]  chr6:30839529-30848159 [Contig_View]  LINC02570 [Vega]
ICGC DataPortalENSG00000237923
TCGA cBioPortalLINC02570
AceView (NCBI)LINC02570
Genatlas (Paris)LINC02570
WikiGenes105375014
SOURCE (Princeton)LINC02570
Genetics Home Reference (NIH)LINC02570
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02570  -     chr6:30839529-30848159 -  6p21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02570  -     6p21.33   [Description]    (hg19-Feb_2009)
EnsemblLINC02570 - 6p21.33 [CytoView hg19]  LINC02570 - 6p21.33 [CytoView hg38]
Mapping of homologs : NCBILINC02570 [Mapview hg19]  LINC02570 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI867733 CR745536
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_113891 NT_167245 NT_167246 NT_167247 NT_167248
Consensus coding sequences : CCDS (NCBI)LINC02570
Cluster EST : UnigeneHs.551770 [ NCBI ]
CGAP (NCI)Hs.551770
Alternative Splicing GalleryENSG00000237923
Gene ExpressionLINC02570 [ NCBI-GEO ]   LINC02570 [ EBI - ARRAY_EXPRESS ]   LINC02570 [ SEEK ]   LINC02570 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02570 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105375014
GTEX Portal (Tissue expression)LINC02570
Human Protein AtlasENSG00000237923-LINC02570 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02570
DMDM Disease mutations105375014
Blocks (Seattle)LINC02570
Human Protein Atlas [tissue]ENSG00000237923-LINC02570 [tissue]
Protein Interaction databases
FunCoupENSG00000237923
BioGRIDLINC02570
STRING (EMBL)LINC02570
ZODIACLINC02570
Ontologies - Pathways
Huge Navigator LINC02570 [HugePedia]
snp3D : Map Gene to Disease105375014
BioCentury BCIQLINC02570
ClinGenLINC02570
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105375014
Clinical trialLINC02570
Miscellaneous
canSAR (ICR)LINC02570 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02570
EVEXLINC02570
GoPubMedLINC02570
iHOPLINC02570
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:58:05 CEST 2018

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