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LINC02877 (long intergenic non-protein coding RNA 2877)

Identity

Other aliasC3orf79
HGNC (Hugo) LINC02877
LocusID (NCBI) 152118
Atlas_Id 54175
Location 3q25.2  [Link to chromosome band 3q25]
Location_base_pair Starts at 153484495 and ends at 153502697 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  Lung: Translocations in Squamous Cell Carcinoma
t(3;3)(q25;q28) PYDC2/C3orf79


External links

Nomenclature
HGNC (Hugo)LINC02877   37259
Cards
Entrez_Gene (NCBI)LINC02877  152118  long intergenic non-protein coding RNA 2877
AliasesC3orf79
GeneCards (Weizmann)LINC02877
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr3:153484495-153502697 [Contig_View]  LINC02877 [Vega]
TCGA cBioPortalLINC02877
AceView (NCBI)LINC02877
Genatlas (Paris)LINC02877
WikiGenes152118
SOURCE (Princeton)LINC02877
Genetics Home Reference (NIH)LINC02877
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02877  -     chr3:153484495-153502697 +  -   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02877  -     -   [Description]    (hg19-Feb_2009)
GoldenPathLINC02877 - - [CytoView hg19]  LINC02877 - - [CytoView hg38]
Mapping of homologs : NCBILINC02877 [Mapview hg19]  LINC02877 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF086445
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02877
Gene ExpressionLINC02877 [ NCBI-GEO ]   LINC02877 [ EBI - ARRAY_EXPRESS ]   LINC02877 [ SEEK ]   LINC02877 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02877 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)152118
GTEX Portal (Tissue expression)LINC02877
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CE67   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CE67  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CE67
Splice isoforms : SwissVarP0CE67
PhosPhoSitePlusP0CE67
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02877
DMDM Disease mutations152118
Blocks (Seattle)LINC02877
SuperfamilyP0CE67
Peptide AtlasP0CE67
Protein Interaction databases
DIP (DOE-UCLA)P0CE67
IntAct (EBI)P0CE67
BioGRIDLINC02877
STRING (EMBL)LINC02877
ZODIACLINC02877
Ontologies - Pathways
QuickGOP0CE67
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC02877
Atlas of Cancer Signalling NetworkLINC02877
Wikipedia pathwaysLINC02877
Orthology - Evolution
OrthoDB152118
Phylogenetic Trees/Animal Genes : TreeFamLINC02877
HOGENOMP0CE67
Homologs : HomoloGeneLINC02877
Homology/Alignments : Family Browser (UCSC)LINC02877
Gene fusions - Rearrangements
Fusion : MitelmanPYDC2/C3orf79 [3q28/3q25.2]  [t(3;3)(q25;q28)]  
Fusion : QuiverLINC02877
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC02877 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC02877
dbVarLINC02877
ClinVarLINC02877
1000_GenomesLINC02877 
Exome Variant ServerLINC02877
Varsome BrowserLINC02877
Genetic variants : HAPMAP152118
Genomic Variants (DGV)LINC02877 [DGVbeta]
DECIPHERLINC02877 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC02877 
Mutations
ICGC Data PortalLINC02877 
TCGA Data PortalLINC02877 
Broad Tumor PortalLINC02877
OASIS PortalLINC02877 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC02877
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC02877
DgiDB (Drug Gene Interaction Database)LINC02877
DoCM (Curated mutations)LINC02877 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC02877 (select a term)
intoGenLINC02877
Cancer3DLINC02877(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLINC02877
MedgenLINC02877
Genetic Testing Registry LINC02877
NextProtP0CE67 [Medical]
TSGene152118
GENETestsLINC02877
Target ValidationLINC02877
Huge Navigator LINC02877 [HugePedia]
snp3D : Map Gene to Disease152118
BioCentury BCIQLINC02877
ClinGenLINC02877
Clinical trials, drugs, therapy
Protein Interactions : CTD152118
Clinical trialLINC02877
Miscellaneous
canSAR (ICR)LINC02877 (select the gene name)
HarmonizomeLINC02877
DataMed IndexLINC02877
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02877
EVEXLINC02877
GoPubMedLINC02877
iHOPLINC02877
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Jun 30 20:20:47 CEST 2020

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