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LINCMD1 (long intergenic non-protein coding RNA, muscle differentiation 1)

Identity

Alias (NCBI)LINC-MD1
MIR133BHG
HGNC (Hugo) LINCMD1
HGNC Previous nameMIR133BHG
 LINC-MD1
HGNC Previous nameMIR133B host gene (non-protein coding)
LocusID (NCBI) 101154644
Atlas_Id 56728
Location 6p12.2  [Link to chromosome band 6p12]
Location_base_pair Starts at 52146814 and ends at 52151023 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)LINCMD1   49089
Cards
Entrez_Gene (NCBI)LINCMD1    long intergenic non-protein coding RNA, muscle differentiation 1
AliasesLINC-MD1; MIR133BHG
GeneCards (Weizmann)LINCMD1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:52146814-52151023 [Contig_View]  LINCMD1 [Vega]
TCGA cBioPortalLINCMD1
AceView (NCBI)LINCMD1
Genatlas (Paris)LINCMD1
SOURCE (Princeton)LINCMD1
Genetics Home Reference (NIH)LINCMD1
Genomic and cartography
GoldenPath hg38 (UCSC)LINCMD1  -     chr6:52146814-52151023 -  6p12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINCMD1  -     6p12.2   [Description]    (hg19-Feb_2009)
GoldenPathLINCMD1 - 6p12.2 [CytoView hg19]  LINCMD1 - 6p12.2 [CytoView hg38]
genome Data Viewer NCBILINCMD1 [Mapview hg19]  
OMIM614933   
Gene and transcription
Genbank (Entrez)BG461844
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINCMD1
Gene ExpressionLINCMD1 [ NCBI-GEO ]   LINCMD1 [ EBI - ARRAY_EXPRESS ]   LINCMD1 [ SEEK ]   LINCMD1 [ MEM ]
Gene Expression Viewer (FireBrowse)LINCMD1 [ Firebrowse - Broad ]
GenevisibleExpression of LINCMD1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)101154644
GTEX Portal (Tissue expression)LINCMD1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINCMD1
Blocks (Seattle)LINCMD1
Protein Interaction databases
BioGRIDLINCMD1
STRING (EMBL)LINCMD1
ZODIACLINCMD1
Ontologies - Pathways
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXLINCMD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Jan 1 18:22:38 CET 2021

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