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LINCMD1 (long intergenic non-protein coding RNA, muscle differentiation 1)

Identity

Other aliasLINC-MD1
MIR133BHG
HGNC (Hugo) LINCMD1
LocusID (NCBI) 101154644
Atlas_Id 56728
Location 6p12.2  [Link to chromosome band 6p12]
Location_base_pair Starts at 52146814 and ends at 52151023 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINCMD1   49089
Cards
Entrez_Gene (NCBI)LINCMD1  101154644  long intergenic non-protein coding RNA, muscle differentiation 1
AliasesLINC-MD1; MIR133BHG
GeneCards (Weizmann)LINCMD1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:52146814-52151023 [Contig_View]  LINCMD1 [Vega]
TCGA cBioPortalLINCMD1
AceView (NCBI)LINCMD1
Genatlas (Paris)LINCMD1
WikiGenes101154644
SOURCE (Princeton)LINCMD1
Genetics Home Reference (NIH)LINCMD1
Genomic and cartography
GoldenPath hg38 (UCSC)LINCMD1  -     chr6:52146814-52151023 -  6p12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINCMD1  -     6p12.2   [Description]    (hg19-Feb_2009)
EnsemblLINCMD1 - 6p12.2 [CytoView hg19]  LINCMD1 - 6p12.2 [CytoView hg38]
Mapping of homologs : NCBILINCMD1 [Mapview hg19]  LINCMD1 [Mapview hg38]
OMIM614933   
Gene and transcription
Genbank (Entrez)BG461844
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINCMD1
Cluster EST : UnigeneHs.582788 [ NCBI ]
CGAP (NCI)Hs.582788
Gene ExpressionLINCMD1 [ NCBI-GEO ]   LINCMD1 [ EBI - ARRAY_EXPRESS ]   LINCMD1 [ SEEK ]   LINCMD1 [ MEM ]
Gene Expression Viewer (FireBrowse)LINCMD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101154644
GTEX Portal (Tissue expression)LINCMD1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINCMD1
DMDM Disease mutations101154644
Blocks (Seattle)LINCMD1
Protein Interaction databases
BioGRIDLINCMD1
STRING (EMBL)LINCMD1
ZODIACLINCMD1
Ontologies - Pathways
Huge Navigator LINCMD1 [HugePedia]
snp3D : Map Gene to Disease101154644
BioCentury BCIQLINCMD1
ClinGenLINCMD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101154644
Clinical trialLINCMD1
Miscellaneous
canSAR (ICR)LINCMD1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINCMD1
EVEXLINCMD1
GoPubMedLINCMD1
iHOPLINCMD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 11:16:49 CET 2018

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