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LINGO4 (leucine rich repeat and Ig domain containing 4)

Identity

Alias_namesLRRN6D
leucine rich repeat neuronal 6D
Other aliasDAAT9248
PRO34002
HGNC (Hugo) LINGO4
LocusID (NCBI) 339398
Atlas_Id 66113
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 151772740 and ends at 151777918 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINGO4   31814
Cards
Entrez_Gene (NCBI)LINGO4  339398  leucine rich repeat and Ig domain containing 4
AliasesDAAT9248; LRRN6D; PRO34002
GeneCards (Weizmann)LINGO4
Ensembl hg19 (Hinxton) [Gene_View]  chr1:151772740-151777918 [Contig_View]  LINGO4 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:151772740-151777918 [Contig_View]  LINGO4 [Vega]
TCGA cBioPortalLINGO4
AceView (NCBI)LINGO4
Genatlas (Paris)LINGO4
WikiGenes339398
SOURCE (Princeton)LINGO4
Genetics Home Reference (NIH)LINGO4
Genomic and cartography
GoldenPath hg19 (UCSC)LINGO4  -     chr1:151772740-151777918 -  1q21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LINGO4  -     1q21.3   [Description]    (hg38-Dec_2013)
EnsemblLINGO4 - 1q21.3 [CytoView hg19]  LINGO4 - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBILINGO4 [Mapview hg19]  LINGO4 [Mapview hg38]
OMIM609794   
Gene and transcription
Genbank (Entrez)AY358115 BC137220 BC137221 BM716911 HY125702
RefSeq transcript (Entrez)NM_001004432
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)LINGO4
Cluster EST : UnigeneHs.591477 [ NCBI ]
CGAP (NCI)Hs.591477
Gene ExpressionLINGO4 [ NCBI-GEO ]   LINGO4 [ EBI - ARRAY_EXPRESS ]   LINGO4 [ SEEK ]   LINGO4 [ MEM ]
Gene Expression Viewer (FireBrowse)LINGO4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)339398
GTEX Portal (Tissue expression)LINGO4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UY18   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UY18  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UY18
Splice isoforms : SwissVarQ6UY18
PhosPhoSitePlusQ6UY18
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)    LRR (PS51450)   
Domains : Interpro (EBI)Cys-rich_flank_reg_C    Ig-like_dom    Ig-like_fold    Ig_I-set    Ig_sub2    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp    LRR-contain_N   
Domain families : Pfam (Sanger)I-set (PF07679)    LRR_8 (PF13855)   
Domain families : Pfam (NCBI)pfam07679    pfam13855   
Domain families : Smart (EMBL)IGc2 (SM00408)  LRR_TYP (SM00369)  LRRCT (SM00082)  LRRNT (SM00013)  
Conserved Domain (NCBI)LINGO4
DMDM Disease mutations339398
Blocks (Seattle)LINGO4
SuperfamilyQ6UY18
Peptide AtlasQ6UY18
HPRD17453
IPIIPI00258050   
Protein Interaction databases
DIP (DOE-UCLA)Q6UY18
IntAct (EBI)Q6UY18
BioGRIDLINGO4
STRING (EMBL)LINGO4
ZODIACLINGO4
Ontologies - Pathways
QuickGOQ6UY18
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkLINGO4
Atlas of Cancer Signalling NetworkLINGO4
Wikipedia pathwaysLINGO4
Orthology - Evolution
OrthoDB339398
Phylogenetic Trees/Animal Genes : TreeFamLINGO4
HOVERGENQ6UY18
HOGENOMQ6UY18
Homologs : HomoloGeneLINGO4
Homology/Alignments : Family Browser (UCSC)LINGO4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINGO4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINGO4
dbVarLINGO4
ClinVarLINGO4
1000_GenomesLINGO4 
Exome Variant ServerLINGO4
ExAC (Exome Aggregation Consortium)LINGO4 (select the gene name)
Genetic variants : HAPMAP339398
Genomic Variants (DGV)LINGO4 [DGVbeta]
DECIPHER (Syndromes)1:151772740-151777918  
CONAN: Copy Number AnalysisLINGO4 
Mutations
ICGC Data PortalLINGO4 
TCGA Data PortalLINGO4 
Broad Tumor PortalLINGO4
OASIS PortalLINGO4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLINGO4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLINGO4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINGO4
DgiDB (Drug Gene Interaction Database)LINGO4
DoCM (Curated mutations)LINGO4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINGO4 (select a term)
intoGenLINGO4
Cancer3DLINGO4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609794   
Orphanet
MedgenLINGO4
Genetic Testing Registry LINGO4
NextProtQ6UY18 [Medical]
TSGene339398
GENETestsLINGO4
Huge Navigator LINGO4 [HugePedia]
snp3D : Map Gene to Disease339398
BioCentury BCIQLINGO4
ClinGenLINGO4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD339398
Chemical/Pharm GKB GenePA162394098
Clinical trialLINGO4
Miscellaneous
canSAR (ICR)LINGO4 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINGO4
EVEXLINGO4
GoPubMedLINGO4
iHOPLINGO4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:14:31 CET 2017

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