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LINS (lines homolog (Drosophila))

Identity

Other aliasLINS1
MRT27
WINS1
HGNC (Hugo) LINS
LocusID (NCBI) 55180
Atlas_Id 66114
Location 15q26.3  [Link to chromosome band 15q26]
Location_base_pair Starts at 101109428 and ends at 101142445 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINS   30922
Cards
Entrez_Gene (NCBI)LINS  55180  lines homolog (Drosophila)
AliasesLINS1; MRT27; WINS1
GeneCards (Weizmann)LINS
Ensembl hg19 (Hinxton) [Gene_View]  chr15:101109428-101142445 [Contig_View]  LINS [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr15:101109428-101142445 [Contig_View]  LINS [Vega]
TCGA cBioPortalLINS
AceView (NCBI)LINS
Genatlas (Paris)LINS
WikiGenes55180
SOURCE (Princeton)LINS
Genetics Home Reference (NIH)LINS
Genomic and cartography
GoldenPath hg19 (UCSC)LINS  -     chr15:101109428-101142445 -  15q26.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LINS  -     15q26.3   [Description]    (hg38-Dec_2013)
EnsemblLINS - 15q26.3 [CytoView hg19]  LINS - 15q26.3 [CytoView hg38]
Mapping of homologs : NCBILINS [Mapview hg19]  LINS [Mapview hg38]
OMIM610350   614340   
Gene and transcription
Genbank (Entrez)AB083157 AI301298 AK001445 AK093868 AK095448
RefSeq transcript (Entrez)NM_001040614 NM_001040615 NM_001040616 NM_018148 NM_181739 NM_181740
RefSeq genomic (Entrez)NC_000015 NC_018926 NG_034076 NT_010194 NW_004929399
Consensus coding sequences : CCDS (NCBI)LINS
Cluster EST : UnigeneHs.105633 [ NCBI ]
CGAP (NCI)Hs.105633
Gene ExpressionLINS [ NCBI-GEO ]   LINS [ EBI - ARRAY_EXPRESS ]   LINS [ SEEK ]   LINS [ MEM ]
Gene Expression Viewer (FireBrowse)LINS [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55180
GTEX Portal (Tissue expression)LINS
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NG48   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NG48  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NG48
Splice isoforms : SwissVarQ8NG48
PhosPhoSitePlusQ8NG48
Domains : Interpro (EBI)Lines_C    Protein_Lines   
Domain families : Pfam (Sanger)LINES_C (PF14695)   
Domain families : Pfam (NCBI)pfam14695   
Conserved Domain (NCBI)LINS
DMDM Disease mutations55180
Blocks (Seattle)LINS
SuperfamilyQ8NG48
Peptide AtlasQ8NG48
HPRD17280
IPIIPI00168910   IPI00332250   IPI00884921   
Protein Interaction databases
DIP (DOE-UCLA)Q8NG48
IntAct (EBI)Q8NG48
BioGRIDLINS
STRING (EMBL)LINS
ZODIACLINS
Ontologies - Pathways
QuickGOQ8NG48
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINS
Atlas of Cancer Signalling NetworkLINS
Wikipedia pathwaysLINS
Orthology - Evolution
OrthoDB55180
Phylogenetic Trees/Animal Genes : TreeFamLINS
HOVERGENQ8NG48
HOGENOMQ8NG48
Homologs : HomoloGeneLINS
Homology/Alignments : Family Browser (UCSC)LINS
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINS [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINS
dbVarLINS
ClinVarLINS
1000_GenomesLINS 
Exome Variant ServerLINS
ExAC (Exome Aggregation Consortium)LINS (select the gene name)
Genetic variants : HAPMAP55180
Genomic Variants (DGV)LINS [DGVbeta]
DECIPHER (Syndromes)15:101109428-101142445  
CONAN: Copy Number AnalysisLINS 
Mutations
ICGC Data PortalLINS 
TCGA Data PortalLINS 
Broad Tumor PortalLINS
OASIS PortalLINS [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLINS  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLINS
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINS
DgiDB (Drug Gene Interaction Database)LINS
DoCM (Curated mutations)LINS (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINS (select a term)
intoGenLINS
Cancer3DLINS(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610350    614340   
Orphanet
MedgenLINS
Genetic Testing Registry LINS
NextProtQ8NG48 [Medical]
TSGene55180
GENETestsLINS
Huge Navigator LINS [HugePedia]
snp3D : Map Gene to Disease55180
BioCentury BCIQLINS
ClinGenLINS
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55180
Chemical/Pharm GKB GenePA142671544
Clinical trialLINS
Miscellaneous
canSAR (ICR)LINS (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINS
EVEXLINS
GoPubMedLINS
iHOPLINS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:14:31 CET 2017

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