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LINS1 (lines homolog 1)

Identity

Alias (NCBI)LINS
MRT27
WINS1
HGNC (Hugo) LINS1
HGNC Alias symbWINS1
HGNC Previous nameLINS
HGNC Previous namelines homolog 1 (Drosophila)
 lines homolog (Drosophila)
LocusID (NCBI) 55180
Atlas_Id 77739
Location 15q26.3  [Link to chromosome band 15q26]
Location_base_pair Starts at 100566924 and ends at 100602184 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
LINS1 (15q26.3)::LINS1 (15q26.3)LINS1 (15q26.3)::RQCD1 (2q35)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)LINS1   30922
Cards
Entrez_Gene (NCBI)LINS1    lines homolog 1
AliasesLINS; MRT27; WINS1
GeneCards (Weizmann)LINS1
Ensembl hg19 (Hinxton)ENSG00000140471 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000140471 [Gene_View]  ENSG00000140471 [Sequence]  chr15:100566924-100602184 [Contig_View]  LINS1 [Vega]
ICGC DataPortalENSG00000140471
TCGA cBioPortalLINS1
AceView (NCBI)LINS1
Genatlas (Paris)LINS1
SOURCE (Princeton)LINS1
Genetics Home Reference (NIH)LINS1
Genomic and cartography
GoldenPath hg38 (UCSC)LINS1  -     chr15:100566924-100602184 -  15q26.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINS1  -     15q26.3   [Description]    (hg19-Feb_2009)
GoldenPathLINS1 - 15q26.3 [CytoView hg19]  LINS1 - 15q26.3 [CytoView hg38]
ImmunoBaseENSG00000140471
Genome Data Viewer NCBILINS1 [Mapview hg19]  
OMIM610350   614340   
Gene and transcription
Genbank (Entrez)AB083157 AI301298 AK001445 AK093868 AK095448
RefSeq transcript (Entrez)NM_001040614 NM_001040615 NM_001040616 NM_001352507 NM_001352508 NM_018148 NM_181739 NM_181740
Consensus coding sequences : CCDS (NCBI)LINS1
Gene ExpressionLINS1 [ NCBI-GEO ]   LINS1 [ EBI - ARRAY_EXPRESS ]   LINS1 [ SEEK ]   LINS1 [ MEM ]
Gene Expression Viewer (FireBrowse)LINS1 [ Firebrowse - Broad ]
GenevisibleExpression of LINS1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55180
GTEX Portal (Tissue expression)LINS1
Human Protein AtlasENSG00000140471-LINS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NG48   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NG48  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NG48
PhosPhoSitePlusQ8NG48
Domains : Interpro (EBI)Lines_C    LINES_N    Protein_Lines   
Domain families : Pfam (Sanger)LINES_C (PF14695)    LINES_N (PF14694)   
Domain families : Pfam (NCBI)pfam14695    pfam14694   
Conserved Domain (NCBI)LINS1
SuperfamilyQ8NG48
AlphaFold pdb e-kbQ8NG48   
Human Protein Atlas [tissue]ENSG00000140471-LINS1 [tissue]
HPRD17280
Protein Interaction databases
DIP (DOE-UCLA)Q8NG48
IntAct (EBI)Q8NG48
BioGRIDLINS1
STRING (EMBL)LINS1
ZODIACLINS1
Ontologies - Pathways
QuickGOQ8NG48
Ontology : AmiGOcognition  
Ontology : EGO-EBIcognition  
NDEx NetworkLINS1
Atlas of Cancer Signalling NetworkLINS1
Wikipedia pathwaysLINS1
Orthology - Evolution
OrthoDB55180
GeneTree (enSembl)ENSG00000140471
Phylogenetic Trees/Animal Genes : TreeFamLINS1
Homologs : HomoloGeneLINS1
Homology/Alignments : Family Browser (UCSC)LINS1
Gene fusions - Rearrangements
Fusion : QuiverLINS1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINS1
dbVarLINS1
ClinVarLINS1
MonarchLINS1
1000_GenomesLINS1 
Exome Variant ServerLINS1
GNOMAD BrowserENSG00000140471
Varsome BrowserLINS1
ACMGLINS1 variants
VarityQ8NG48
Genomic Variants (DGV)LINS1 [DGVbeta]
DECIPHERLINS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINS1 
Mutations
ICGC Data PortalLINS1 
TCGA Data PortalLINS1 
Broad Tumor PortalLINS1
OASIS PortalLINS1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLINS1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DLINS1
Mutations and Diseases : HGMDLINS1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaLINS1
DgiDB (Drug Gene Interaction Database)LINS1
DoCM (Curated mutations)LINS1
CIViC (Clinical Interpretations of Variants in Cancer)LINS1
Cancer3DLINS1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610350    614340   
Orphanet11804   
DisGeNETLINS1
MedgenLINS1
Genetic Testing Registry LINS1
NextProtQ8NG48 [Medical]
GENETestsLINS1
Target ValidationLINS1
Huge Navigator LINS1 [HugePedia]
ClinGenLINS1
Clinical trials, drugs, therapy
MyCancerGenomeLINS1
Protein Interactions : CTDLINS1
Pharm GKB GenePA142671544
PharosQ8NG48
Clinical trialLINS1
Miscellaneous
canSAR (ICR)LINS1
HarmonizomeLINS1
ARCHS4LINS1
DataMed IndexLINS1
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXLINS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sun Jan 16 19:03:57 CET 2022

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