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LIPF (lipase F, gastric type)

Identity

Alias_nameslipase
Alias_symbol (synonym)HGL
HLAL
Other aliasGL
HGNC (Hugo) LIPF
LocusID (NCBI) 8513
Atlas_Id 51382
Location 10q23.31  [Link to chromosome band 10q23]
Location_base_pair Starts at 90424146 and ends at 90438572 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
FBRSL1 (12q24.33) / LIPF (10q23.31)LIPF (10q23.31) / LIPF (10q23.31)LIPF (10q23.31) / PGA3 (11q12.2)
YWHAE (17p13.3) / LIPF (10q23.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LIPF   6622
Cards
Entrez_Gene (NCBI)LIPF  8513  lipase F, gastric type
AliasesGL; HGL; HLAL
GeneCards (Weizmann)LIPF
Ensembl hg19 (Hinxton)ENSG00000182333 [Gene_View]  chr10:90424146-90438572 [Contig_View]  LIPF [Vega]
Ensembl hg38 (Hinxton)ENSG00000182333 [Gene_View]  chr10:90424146-90438572 [Contig_View]  LIPF [Vega]
ICGC DataPortalENSG00000182333
TCGA cBioPortalLIPF
AceView (NCBI)LIPF
Genatlas (Paris)LIPF
WikiGenes8513
SOURCE (Princeton)LIPF
Genetics Home Reference (NIH)LIPF
Genomic and cartography
GoldenPath hg19 (UCSC)LIPF  -     chr10:90424146-90438572 +  10q23.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LIPF  -     10q23.31   [Description]    (hg38-Dec_2013)
EnsemblLIPF - 10q23.31 [CytoView hg19]  LIPF - 10q23.31 [CytoView hg38]
Mapping of homologs : NCBILIPF [Mapview hg19]  LIPF [Mapview hg38]
OMIM601980   
Gene and transcription
Genbank (Entrez)A01046 AK223468 AK301310 AK301320 AK308224
RefSeq transcript (Entrez)NM_001198828 NM_001198829 NM_001198830 NM_004190
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)LIPF
Cluster EST : UnigeneHs.523130 [ NCBI ]
CGAP (NCI)Hs.523130
Alternative Splicing GalleryENSG00000182333
Gene ExpressionLIPF [ NCBI-GEO ]   LIPF [ EBI - ARRAY_EXPRESS ]   LIPF [ SEEK ]   LIPF [ MEM ]
Gene Expression Viewer (FireBrowse)LIPF [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8513
GTEX Portal (Tissue expression)LIPF
Protein : pattern, domain, 3D structure
UniProt/SwissProtP07098   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP07098  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP07098
Splice isoforms : SwissVarP07098
Catalytic activity : Enzyme3.1.1.3 [ Enzyme-Expasy ]   3.1.1.33.1.1.3 [ IntEnz-EBI ]   3.1.1.3 [ BRENDA ]   3.1.1.3 [ KEGG ]   
PhosPhoSitePlusP07098
Domaine pattern : Prosite (Expaxy)LIPASE_SER (PS00120)   
Domains : Interpro (EBI)AB_hydrolase    AB_hydrolase_1    Lipase_euk   
Domain families : Pfam (Sanger)Abhydrolase_1 (PF00561)   
Domain families : Pfam (NCBI)pfam00561   
Conserved Domain (NCBI)LIPF
DMDM Disease mutations8513
Blocks (Seattle)LIPF
PDB (SRS)1HLG   
PDB (PDBSum)1HLG   
PDB (IMB)1HLG   
PDB (RSDB)1HLG   
Structural Biology KnowledgeBase1HLG   
SCOP (Structural Classification of Proteins)1HLG   
CATH (Classification of proteins structures)1HLG   
SuperfamilyP07098
Human Protein AtlasENSG00000182333
Peptide AtlasP07098
HPRD09063
IPIIPI00009893   IPI00978830   IPI00978380   IPI00640755   
Protein Interaction databases
DIP (DOE-UCLA)P07098
IntAct (EBI)P07098
FunCoupENSG00000182333
BioGRIDLIPF
STRING (EMBL)LIPF
ZODIACLIPF
Ontologies - Pathways
QuickGOP07098
Ontology : AmiGOtriglyceride lipase activity  cellular_component  extracellular region  mitochondrion  malate metabolic process  triglyceride metabolic process  lipid binding  lipid catabolic process  malate dehydrogenase activity  oxidation-reduction process  
Ontology : EGO-EBItriglyceride lipase activity  cellular_component  extracellular region  mitochondrion  malate metabolic process  triglyceride metabolic process  lipid binding  lipid catabolic process  malate dehydrogenase activity  oxidation-reduction process  
Pathways : KEGGGlycerolipid metabolism    Fat digestion and absorption   
NDEx NetworkLIPF
Atlas of Cancer Signalling NetworkLIPF
Wikipedia pathwaysLIPF
Orthology - Evolution
OrthoDB8513
GeneTree (enSembl)ENSG00000182333
Phylogenetic Trees/Animal Genes : TreeFamLIPF
HOVERGENP07098
HOGENOMP07098
Homologs : HomoloGeneLIPF
Homology/Alignments : Family Browser (UCSC)LIPF
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLIPF [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LIPF
dbVarLIPF
ClinVarLIPF
1000_GenomesLIPF 
Exome Variant ServerLIPF
ExAC (Exome Aggregation Consortium)LIPF (select the gene name)
Genetic variants : HAPMAP8513
Genomic Variants (DGV)LIPF [DGVbeta]
DECIPHER (Syndromes)10:90424146-90438572  ENSG00000182333
CONAN: Copy Number AnalysisLIPF 
Mutations
ICGC Data PortalLIPF 
TCGA Data PortalLIPF 
Broad Tumor PortalLIPF
OASIS PortalLIPF [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLIPF  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLIPF
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LIPF
DgiDB (Drug Gene Interaction Database)LIPF
DoCM (Curated mutations)LIPF (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LIPF (select a term)
intoGenLIPF
Cancer3DLIPF(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601980   
Orphanet
MedgenLIPF
Genetic Testing Registry LIPF
NextProtP07098 [Medical]
TSGene8513
GENETestsLIPF
Huge Navigator LIPF [HugePedia]
snp3D : Map Gene to Disease8513
BioCentury BCIQLIPF
ClinGenLIPF
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8513
Chemical/Pharm GKB GenePA30394
Clinical trialLIPF
Miscellaneous
canSAR (ICR)LIPF (select the gene name)
Probes
Litterature
PubMed36 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLIPF
EVEXLIPF
GoPubMedLIPF
iHOPLIPF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:12:59 CET 2017

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