Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LIPG (lipase G, endothelial type)

Identity

Alias_nameslipase
Alias_symbol (synonym)EDL
Other aliasEL
PRO719
HGNC (Hugo) LIPG
LocusID (NCBI) 9388
Atlas_Id 51665
Location 18q21.1  [Link to chromosome band 18q21]
Location_base_pair Starts at 49562031 and ends at 49592908 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
STT3A (11q24.2) / LIPG (18q21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LIPG   6623
Cards
Entrez_Gene (NCBI)LIPG  9388  lipase G, endothelial type
AliasesEDL; EL; PRO719
GeneCards (Weizmann)LIPG
Ensembl hg19 (Hinxton)ENSG00000101670 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000101670 [Gene_View]  chr18:49562031-49592908 [Contig_View]  LIPG [Vega]
ICGC DataPortalENSG00000101670
TCGA cBioPortalLIPG
AceView (NCBI)LIPG
Genatlas (Paris)LIPG
WikiGenes9388
SOURCE (Princeton)LIPG
Genetics Home Reference (NIH)LIPG
Genomic and cartography
GoldenPath hg38 (UCSC)LIPG  -     chr18:49562031-49592908 +  18q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LIPG  -     18q21.1   [Description]    (hg19-Feb_2009)
EnsemblLIPG - 18q21.1 [CytoView hg19]  LIPG - 18q21.1 [CytoView hg38]
Mapping of homologs : NCBILIPG [Mapview hg19]  LIPG [Mapview hg38]
OMIM603684   
Gene and transcription
Genbank (Entrez)AF118767 AI861822 AK124636 AK125344 AK291799
RefSeq transcript (Entrez)NM_001308006 NM_006033
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LIPG
Cluster EST : UnigeneHs.465102 [ NCBI ]
CGAP (NCI)Hs.465102
Alternative Splicing GalleryENSG00000101670
Gene ExpressionLIPG [ NCBI-GEO ]   LIPG [ EBI - ARRAY_EXPRESS ]   LIPG [ SEEK ]   LIPG [ MEM ]
Gene Expression Viewer (FireBrowse)LIPG [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9388
GTEX Portal (Tissue expression)LIPG
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5X9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5X9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5X9
Splice isoforms : SwissVarQ9Y5X9
Catalytic activity : Enzyme3.1.1.3 [ Enzyme-Expasy ]   3.1.1.33.1.1.3 [ IntEnz-EBI ]   3.1.1.3 [ BRENDA ]   3.1.1.3 [ KEGG ]   
PhosPhoSitePlusQ9Y5X9
Domaine pattern : Prosite (Expaxy)LIPASE_SER (PS00120)    PLAT (PS50095)   
Domains : Interpro (EBI)AB_hydrolase    Lipase/vitellogenin    Lipase_LIPH    Lipase_N    Lipo_Lipase    PLAT/LH2_dom    TAG_lipase   
Domain families : Pfam (Sanger)Lipase (PF00151)    PLAT (PF01477)   
Domain families : Pfam (NCBI)pfam00151    pfam01477   
Domain families : Smart (EMBL)LH2 (SM00308)  
Conserved Domain (NCBI)LIPG
DMDM Disease mutations9388
Blocks (Seattle)LIPG
SuperfamilyQ9Y5X9
Human Protein AtlasENSG00000101670
Peptide AtlasQ9Y5X9
HPRD04730
IPIIPI00005686   IPI00554544   IPI01018253   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5X9
IntAct (EBI)Q9Y5X9
FunCoupENSG00000101670
BioGRIDLIPG
STRING (EMBL)LIPG
ZODIACLIPG
Ontologies - Pathways
QuickGOQ9Y5X9
Ontology : AmiGOlipoprotein lipase activity  phospholipase activity  extracellular region  extracellular space  early endosome  Golgi apparatus  lipid metabolic process  response to nutrient  heparin binding  cell proliferation  phosphatidylcholine 1-acylhydrolase activity  phospholipid catabolic process  cell surface  positive regulation of high-density lipoprotein particle clearance  positive regulation of cholesterol transport  high-density lipoprotein particle remodeling  cholesterol homeostasis  reverse cholesterol transport  lipid digestion  regulation of lipoprotein metabolic process  phospholipid homeostasis  
Ontology : EGO-EBIlipoprotein lipase activity  phospholipase activity  extracellular region  extracellular space  early endosome  Golgi apparatus  lipid metabolic process  response to nutrient  heparin binding  cell proliferation  phosphatidylcholine 1-acylhydrolase activity  phospholipid catabolic process  cell surface  positive regulation of high-density lipoprotein particle clearance  positive regulation of cholesterol transport  high-density lipoprotein particle remodeling  cholesterol homeostasis  reverse cholesterol transport  lipid digestion  regulation of lipoprotein metabolic process  phospholipid homeostasis  
Pathways : KEGGGlycerolipid metabolism   
NDEx NetworkLIPG
Atlas of Cancer Signalling NetworkLIPG
Wikipedia pathwaysLIPG
Orthology - Evolution
OrthoDB9388
GeneTree (enSembl)ENSG00000101670
Phylogenetic Trees/Animal Genes : TreeFamLIPG
HOVERGENQ9Y5X9
HOGENOMQ9Y5X9
Homologs : HomoloGeneLIPG
Homology/Alignments : Family Browser (UCSC)LIPG
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLIPG [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LIPG
dbVarLIPG
ClinVarLIPG
1000_GenomesLIPG 
Exome Variant ServerLIPG
ExAC (Exome Aggregation Consortium)LIPG (select the gene name)
Genetic variants : HAPMAP9388
Genomic Variants (DGV)LIPG [DGVbeta]
DECIPHERLIPG [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLIPG 
Mutations
ICGC Data PortalLIPG 
TCGA Data PortalLIPG 
Broad Tumor PortalLIPG
OASIS PortalLIPG [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLIPG  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLIPG
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LIPG
DgiDB (Drug Gene Interaction Database)LIPG
DoCM (Curated mutations)LIPG (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LIPG (select a term)
intoGenLIPG
Cancer3DLIPG(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603684   
Orphanet
MedgenLIPG
Genetic Testing Registry LIPG
NextProtQ9Y5X9 [Medical]
TSGene9388
GENETestsLIPG
Huge Navigator LIPG [HugePedia]
snp3D : Map Gene to Disease9388
BioCentury BCIQLIPG
ClinGenLIPG
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9388
Chemical/Pharm GKB GenePA30395
Clinical trialLIPG
Miscellaneous
canSAR (ICR)LIPG (select the gene name)
Probes
Litterature
PubMed116 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLIPG
EVEXLIPG
GoPubMedLIPG
iHOPLIPG
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:22:41 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.