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LIPH (lipase H)

Identity

Alias_nameslipase
Alias_symbol (synonym)mPA-PLA1
PLA1B
mPA-PLA1alpha
LPDLR
HGNC (Hugo) LIPH
LocusID (NCBI) 200879
Atlas_Id 52531
Location 3q27.2  [Link to chromosome band 3q27]
Location_base_pair Starts at 185225570 and ends at 185270369 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
LIPH (3q27.2) / LIPH (3q27.2)RPS27A (2p16.1) / LIPH (3q27.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LIPH   18483
Cards
Entrez_Gene (NCBI)LIPH  200879  lipase H
AliasesAH; ARWH2; HYPT7; LAH2; 
LPDLR; PLA1B; mPA-PLA1
GeneCards (Weizmann)LIPH
Ensembl hg19 (Hinxton)ENSG00000163898 [Gene_View]  chr3:185225570-185270369 [Contig_View]  LIPH [Vega]
Ensembl hg38 (Hinxton)ENSG00000163898 [Gene_View]  chr3:185225570-185270369 [Contig_View]  LIPH [Vega]
ICGC DataPortalENSG00000163898
TCGA cBioPortalLIPH
AceView (NCBI)LIPH
Genatlas (Paris)LIPH
WikiGenes200879
SOURCE (Princeton)LIPH
Genetics Home Reference (NIH)LIPH
Genomic and cartography
GoldenPath hg19 (UCSC)LIPH  -     chr3:185225570-185270369 -  3q27.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LIPH  -     3q27.2   [Description]    (hg38-Dec_2013)
EnsemblLIPH - 3q27.2 [CytoView hg19]  LIPH - 3q27.2 [CytoView hg38]
Mapping of homologs : NCBILIPH [Mapview hg19]  LIPH [Mapview hg38]
OMIM604379   607365   
Gene and transcription
Genbank (Entrez)AK074229 AK122651 AK298380 AY036912 AY093498
RefSeq transcript (Entrez)NM_139248
RefSeq genomic (Entrez)NC_000003 NC_018914 NG_012183 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)LIPH
Cluster EST : UnigeneHs.68864 [ NCBI ]
CGAP (NCI)Hs.68864
Alternative Splicing GalleryENSG00000163898
Gene ExpressionLIPH [ NCBI-GEO ]   LIPH [ EBI - ARRAY_EXPRESS ]   LIPH [ SEEK ]   LIPH [ MEM ]
Gene Expression Viewer (FireBrowse)LIPH [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)200879
GTEX Portal (Tissue expression)LIPH
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WWY8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WWY8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WWY8
Splice isoforms : SwissVarQ8WWY8
Catalytic activity : Enzyme3.1.1.- [ Enzyme-Expasy ]   3.1.1.-3.1.1.- [ IntEnz-EBI ]   3.1.1.- [ BRENDA ]   3.1.1.- [ KEGG ]   
PhosPhoSitePlusQ8WWY8
Domains : Interpro (EBI)AB_hydrolase    Lipase_LIPH    Lipase_N    TAG_lipase   
Domain families : Pfam (Sanger)Lipase (PF00151)   
Domain families : Pfam (NCBI)pfam00151   
Conserved Domain (NCBI)LIPH
DMDM Disease mutations200879
Blocks (Seattle)LIPH
SuperfamilyQ8WWY8
Human Protein AtlasENSG00000163898
Peptide AtlasQ8WWY8
HPRD07392
IPIIPI00103480   IPI00828075   IPI00926326   IPI00926074   IPI00925893   
Protein Interaction databases
DIP (DOE-UCLA)Q8WWY8
IntAct (EBI)Q8WWY8
FunCoupENSG00000163898
BioGRIDLIPH
STRING (EMBL)LIPH
ZODIACLIPH
Ontologies - Pathways
QuickGOQ8WWY8
Ontology : AmiGOphospholipase activity  phospholipase activity  extracellular space  plasma membrane  plasma membrane  heparin binding  lipid catabolic process  lipid digestion  carboxylic ester hydrolase activity  
Ontology : EGO-EBIphospholipase activity  phospholipase activity  extracellular space  plasma membrane  plasma membrane  heparin binding  lipid catabolic process  lipid digestion  carboxylic ester hydrolase activity  
NDEx NetworkLIPH
Atlas of Cancer Signalling NetworkLIPH
Wikipedia pathwaysLIPH
Orthology - Evolution
OrthoDB200879
GeneTree (enSembl)ENSG00000163898
Phylogenetic Trees/Animal Genes : TreeFamLIPH
HOVERGENQ8WWY8
HOGENOMQ8WWY8
Homologs : HomoloGeneLIPH
Homology/Alignments : Family Browser (UCSC)LIPH
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLIPH [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LIPH
dbVarLIPH
ClinVarLIPH
1000_GenomesLIPH 
Exome Variant ServerLIPH
ExAC (Exome Aggregation Consortium)LIPH (select the gene name)
Genetic variants : HAPMAP200879
Genomic Variants (DGV)LIPH [DGVbeta]
DECIPHER (Syndromes)3:185225570-185270369  ENSG00000163898
CONAN: Copy Number AnalysisLIPH 
Mutations
ICGC Data PortalLIPH 
TCGA Data PortalLIPH 
Broad Tumor PortalLIPH
OASIS PortalLIPH [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLIPH  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLIPH
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LIPH
DgiDB (Drug Gene Interaction Database)LIPH
DoCM (Curated mutations)LIPH (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LIPH (select a term)
intoGenLIPH
Cancer3DLIPH(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604379    607365   
Orphanet8571    10760   
MedgenLIPH
Genetic Testing Registry LIPH
NextProtQ8WWY8 [Medical]
TSGene200879
GENETestsLIPH
Huge Navigator LIPH [HugePedia]
snp3D : Map Gene to Disease200879
BioCentury BCIQLIPH
ClinGenLIPH
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD200879
Chemical/Pharm GKB GenePA134934352
Clinical trialLIPH
Miscellaneous
canSAR (ICR)LIPH (select the gene name)
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLIPH
EVEXLIPH
GoPubMedLIPH
iHOPLIPH
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Nov 18 19:41:57 CET 2016

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