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LIPI (lipase I)

Identity

Alias_nameslipase
Alias_symbol (synonym)PRED5
LPDL
CT17
mPA-PLA1beta
PLA1C
Other aliasmPA-PLA1 beta
HGNC (Hugo) LIPI
LocusID (NCBI) 149998
Atlas_Id 52540
Location 21q11.2  [Link to chromosome band 21q11]
Location_base_pair Starts at 14108814 and ends at 14210891 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CCDC6 (10q21.2) / LIPI (21q11.2)LIPI (21q11.2) / LIPI (21q11.2)CCDC6 10q21.2 / LIPI 21q11.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LIPI   18821
Cards
Entrez_Gene (NCBI)LIPI  149998  lipase I
AliasesCT17; LPDL; PLA1C; PRED5; 
mPA-PLA1
GeneCards (Weizmann)LIPI
Ensembl hg19 (Hinxton)ENSG00000188992 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188992 [Gene_View]  chr21:14108814-14210891 [Contig_View]  LIPI [Vega]
ICGC DataPortalENSG00000188992
TCGA cBioPortalLIPI
AceView (NCBI)LIPI
Genatlas (Paris)LIPI
WikiGenes149998
SOURCE (Princeton)LIPI
Genetics Home Reference (NIH)LIPI
Genomic and cartography
GoldenPath hg38 (UCSC)LIPI  -     chr21:14108814-14210891 -  21q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LIPI  -     21q11.2   [Description]    (hg19-Feb_2009)
EnsemblLIPI - 21q11.2 [CytoView hg19]  LIPI - 21q11.2 [CytoView hg38]
Mapping of homologs : NCBILIPI [Mapview hg19]  LIPI [Mapview hg38]
OMIM145750   609252   
Gene and transcription
Genbank (Entrez)AI017218 AY197607 AY918476 BC140336 BC148691
RefSeq transcript (Entrez)NM_001302998 NM_001302999 NM_001303000 NM_001303001 NM_145317 NM_198996
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LIPI
Cluster EST : UnigeneHs.139907 [ NCBI ]
CGAP (NCI)Hs.139907
Alternative Splicing GalleryENSG00000188992
Gene ExpressionLIPI [ NCBI-GEO ]   LIPI [ EBI - ARRAY_EXPRESS ]   LIPI [ SEEK ]   LIPI [ MEM ]
Gene Expression Viewer (FireBrowse)LIPI [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)149998
GTEX Portal (Tissue expression)LIPI
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6XZB0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6XZB0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6XZB0
Splice isoforms : SwissVarQ6XZB0
Catalytic activity : Enzyme3.1.1.- [ Enzyme-Expasy ]   3.1.1.-3.1.1.- [ IntEnz-EBI ]   3.1.1.- [ BRENDA ]   3.1.1.- [ KEGG ]   
PhosPhoSitePlusQ6XZB0
Domains : Interpro (EBI)AB_hydrolase    Lipase/vitellogenin    Lipase_LIPH    Lipase_N    TAG_lipase   
Domain families : Pfam (Sanger)Lipase (PF00151)   
Domain families : Pfam (NCBI)pfam00151   
Conserved Domain (NCBI)LIPI
DMDM Disease mutations149998
Blocks (Seattle)LIPI
SuperfamilyQ6XZB0
Human Protein AtlasENSG00000188992
Peptide AtlasQ6XZB0
HPRD14193
IPIIPI00654722   IPI00395604   IPI00554540   
Protein Interaction databases
DIP (DOE-UCLA)Q6XZB0
IntAct (EBI)Q6XZB0
FunCoupENSG00000188992
BioGRIDLIPI
STRING (EMBL)LIPI
ZODIACLIPI
Ontologies - Pathways
QuickGOQ6XZB0
Ontology : AmiGOphospholipase activity  phospholipase activity  extracellular region  plasma membrane  heparin binding  lipid catabolic process  lipid digestion  carboxylic ester hydrolase activity  
Ontology : EGO-EBIphospholipase activity  phospholipase activity  extracellular region  plasma membrane  heparin binding  lipid catabolic process  lipid digestion  carboxylic ester hydrolase activity  
NDEx NetworkLIPI
Atlas of Cancer Signalling NetworkLIPI
Wikipedia pathwaysLIPI
Orthology - Evolution
OrthoDB149998
GeneTree (enSembl)ENSG00000188992
Phylogenetic Trees/Animal Genes : TreeFamLIPI
HOVERGENQ6XZB0
HOGENOMQ6XZB0
Homologs : HomoloGeneLIPI
Homology/Alignments : Family Browser (UCSC)LIPI
Gene fusions - Rearrangements
Fusion : MitelmanCCDC6/LIPI [10q21.2/21q11.2]  [t(10;21)(q21;q11)]  
Fusion: TCGACCDC6 10q21.2 LIPI 21q11.2 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLIPI [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LIPI
dbVarLIPI
ClinVarLIPI
1000_GenomesLIPI 
Exome Variant ServerLIPI
ExAC (Exome Aggregation Consortium)LIPI (select the gene name)
Genetic variants : HAPMAP149998
Genomic Variants (DGV)LIPI [DGVbeta]
DECIPHERLIPI [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLIPI 
Mutations
ICGC Data PortalLIPI 
TCGA Data PortalLIPI 
Broad Tumor PortalLIPI
OASIS PortalLIPI [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLIPI  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLIPI
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LIPI
DgiDB (Drug Gene Interaction Database)LIPI
DoCM (Curated mutations)LIPI (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LIPI (select a term)
intoGenLIPI
Cancer3DLIPI(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM145750    609252   
Orphanet
MedgenLIPI
Genetic Testing Registry LIPI
NextProtQ6XZB0 [Medical]
TSGene149998
GENETestsLIPI
Huge Navigator LIPI [HugePedia]
snp3D : Map Gene to Disease149998
BioCentury BCIQLIPI
ClinGenLIPI
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD149998
Chemical/Pharm GKB GenePA38695
Clinical trialLIPI
Miscellaneous
canSAR (ICR)LIPI (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLIPI
EVEXLIPI
GoPubMedLIPI
iHOPLIPI
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:22:41 CEST 2017

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