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LIPJ (lipase family member J)

Identity

Alias (NCBI)LIPL1
bA425M17.2
HGNC (Hugo) LIPJ
HGNC Alias symbbA425M17.2
HGNC Previous nameLIPL1
HGNC Previous namelipase-like, ab-hydrolase domain containing 1
LocusID (NCBI) 142910
Atlas_Id 66117
Location 10q23.31  [Link to chromosome band 10q23]
Location_base_pair Starts at 88586762 and ends at 88606976 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MINPP1 (10q23.2) / LIPJ (10q23.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)LIPJ   21773
Cards
Entrez_Gene (NCBI)LIPJ    lipase family member J
AliasesLIPL1; bA425M17.2
GeneCards (Weizmann)LIPJ
Ensembl hg19 (Hinxton)ENSG00000204022 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204022 [Gene_View]  ENSG00000204022 [Sequence]  chr10:88586762-88606976 [Contig_View]  LIPJ [Vega]
ICGC DataPortalENSG00000204022
TCGA cBioPortalLIPJ
AceView (NCBI)LIPJ
Genatlas (Paris)LIPJ
SOURCE (Princeton)LIPJ
Genetics Home Reference (NIH)LIPJ
Genomic and cartography
GoldenPath hg38 (UCSC)LIPJ  -     chr10:88586762-88606976 +  10q23.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LIPJ  -     10q23.31   [Description]    (hg19-Feb_2009)
GoldenPathLIPJ - 10q23.31 [CytoView hg19]  LIPJ - 10q23.31 [CytoView hg38]
ImmunoBaseENSG00000204022
Genome Data Viewer NCBILIPJ [Mapview hg19]  
OMIM613921   
Gene and transcription
Genbank (Entrez)AK090891 BC031219 BC042900
RefSeq transcript (Entrez)NM_001010939 NM_001394640
Consensus coding sequences : CCDS (NCBI)LIPJ
Gene ExpressionLIPJ [ NCBI-GEO ]   LIPJ [ EBI - ARRAY_EXPRESS ]   LIPJ [ SEEK ]   LIPJ [ MEM ]
Gene Expression Viewer (FireBrowse)LIPJ [ Firebrowse - Broad ]
GenevisibleExpression of LIPJ in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)142910
GTEX Portal (Tissue expression)LIPJ
Human Protein AtlasENSG00000204022-LIPJ [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5W064   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5W064  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5W064
Catalytic activity : Enzyme3.1.1.- [ Enzyme-Expasy ]   3.1.1.-3.1.1.- [ IntEnz-EBI ]   3.1.1.- [ BRENDA ]   3.1.1.- [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusQ5W064
Domaine pattern : Prosite (Expaxy)LIPASE_SER (PS00120)   
Domains : Interpro (EBI)AB_hydrolase    AB_hydrolase_lipase    Lipase_euk   
Domain families : Pfam (Sanger)Abhydro_lipase (PF04083)   
Domain families : Pfam (NCBI)pfam04083   
Conserved Domain (NCBI)LIPJ
SuperfamilyQ5W064
AlphaFold pdb e-kbQ5W064   
Human Protein Atlas [tissue]ENSG00000204022-LIPJ [tissue]
HPRD17281
Protein Interaction databases
DIP (DOE-UCLA)Q5W064
IntAct (EBI)Q5W064
BioGRIDLIPJ
STRING (EMBL)LIPJ
ZODIACLIPJ
Ontologies - Pathways
QuickGOQ5W064
Ontology : AmiGOlipid catabolic process  hydrolase activity, acting on ester bonds  intracellular membrane-bounded organelle  
Ontology : EGO-EBIlipid catabolic process  hydrolase activity, acting on ester bonds  intracellular membrane-bounded organelle  
NDEx NetworkLIPJ
Atlas of Cancer Signalling NetworkLIPJ
Wikipedia pathwaysLIPJ
Orthology - Evolution
OrthoDB142910
GeneTree (enSembl)ENSG00000204022
Phylogenetic Trees/Animal Genes : TreeFamLIPJ
Homologs : HomoloGeneLIPJ
Homology/Alignments : Family Browser (UCSC)LIPJ
Gene fusions - Rearrangements
Fusion : QuiverLIPJ
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLIPJ [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LIPJ
dbVarLIPJ
ClinVarLIPJ
MonarchLIPJ
1000_GenomesLIPJ 
Exome Variant ServerLIPJ
GNOMAD BrowserENSG00000204022
Varsome BrowserLIPJ
ACMGLIPJ variants
VarityQ5W064
Genomic Variants (DGV)LIPJ [DGVbeta]
DECIPHERLIPJ [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLIPJ 
Mutations
ICGC Data PortalLIPJ 
TCGA Data PortalLIPJ 
Broad Tumor PortalLIPJ
OASIS PortalLIPJ [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLIPJ  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DLIPJ
Mutations and Diseases : HGMDLIPJ
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaLIPJ
DgiDB (Drug Gene Interaction Database)LIPJ
DoCM (Curated mutations)LIPJ
CIViC (Clinical Interpretations of Variants in Cancer)LIPJ
Cancer3DLIPJ
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613921   
Orphanet
DisGeNETLIPJ
MedgenLIPJ
Genetic Testing Registry LIPJ
NextProtQ5W064 [Medical]
GENETestsLIPJ
Target ValidationLIPJ
Huge Navigator LIPJ [HugePedia]
ClinGenLIPJ
Clinical trials, drugs, therapy
MyCancerGenomeLIPJ
Protein Interactions : CTDLIPJ
Pharm GKB GenePA162394099
PharosQ5W064
Clinical trialLIPJ
Miscellaneous
canSAR (ICR)LIPJ
HarmonizomeLIPJ
DataMed IndexLIPJ
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXLIPJ
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:00:53 CEST 2021

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