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LIPJ (lipase family member J)

Identity

Alias_namesLIPL1
lipase-like, ab-hydrolase domain containing 1
Alias_symbol (synonym)bA425M17.2
Other alias
HGNC (Hugo) LIPJ
LocusID (NCBI) 142910
Atlas_Id 66117
Location 10q23.31  [Link to chromosome band 10q23]
Location_base_pair Starts at 88586762 and ends at 88606976 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MINPP1 (10q23.2) / LIPJ (10q23.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LIPJ   21773
Cards
Entrez_Gene (NCBI)LIPJ  142910  lipase family member J
AliasesLIPL1; bA425M17.2
GeneCards (Weizmann)LIPJ
Ensembl hg19 (Hinxton)ENSG00000204022 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204022 [Gene_View]  chr10:88586762-88606976 [Contig_View]  LIPJ [Vega]
ICGC DataPortalENSG00000204022
TCGA cBioPortalLIPJ
AceView (NCBI)LIPJ
Genatlas (Paris)LIPJ
WikiGenes142910
SOURCE (Princeton)LIPJ
Genetics Home Reference (NIH)LIPJ
Genomic and cartography
GoldenPath hg38 (UCSC)LIPJ  -     chr10:88586762-88606976 +  10q23.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LIPJ  -     10q23.31   [Description]    (hg19-Feb_2009)
EnsemblLIPJ - 10q23.31 [CytoView hg19]  LIPJ - 10q23.31 [CytoView hg38]
Mapping of homologs : NCBILIPJ [Mapview hg19]  LIPJ [Mapview hg38]
OMIM613921   
Gene and transcription
Genbank (Entrez)AK090891 BC031219 BC042900
RefSeq transcript (Entrez)NM_001010939
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LIPJ
Cluster EST : UnigeneHs.601660 [ NCBI ]
CGAP (NCI)Hs.601660
Alternative Splicing GalleryENSG00000204022
Gene ExpressionLIPJ [ NCBI-GEO ]   LIPJ [ EBI - ARRAY_EXPRESS ]   LIPJ [ SEEK ]   LIPJ [ MEM ]
Gene Expression Viewer (FireBrowse)LIPJ [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)142910
GTEX Portal (Tissue expression)LIPJ
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5W064   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5W064  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5W064
Splice isoforms : SwissVarQ5W064
Catalytic activity : Enzyme3.1.1.- [ Enzyme-Expasy ]   3.1.1.-3.1.1.- [ IntEnz-EBI ]   3.1.1.- [ BRENDA ]   3.1.1.- [ KEGG ]   
PhosPhoSitePlusQ5W064
Domaine pattern : Prosite (Expaxy)LIPASE_SER (PS00120)   
Domains : Interpro (EBI)AB_hydrolase    AB_hydrolase_lipase    Lipase_euk   
Domain families : Pfam (Sanger)Abhydro_lipase (PF04083)   
Domain families : Pfam (NCBI)pfam04083   
Conserved Domain (NCBI)LIPJ
DMDM Disease mutations142910
Blocks (Seattle)LIPJ
SuperfamilyQ5W064
Human Protein AtlasENSG00000204022
Peptide AtlasQ5W064
HPRD17281
IPIIPI00082138   IPI00983991   
Protein Interaction databases
DIP (DOE-UCLA)Q5W064
IntAct (EBI)Q5W064
FunCoupENSG00000204022
BioGRIDLIPJ
STRING (EMBL)LIPJ
ZODIACLIPJ
Ontologies - Pathways
QuickGOQ5W064
Ontology : AmiGOlipid catabolic process  hydrolase activity, acting on ester bonds  
Ontology : EGO-EBIlipid catabolic process  hydrolase activity, acting on ester bonds  
NDEx NetworkLIPJ
Atlas of Cancer Signillinc networkLIPJ
Wikipedia pathwaysLIPJ
Orthology - Evolution
OrthoDB142910
GeneTree (enSembl)ENSG00000204022
Phylogenetic Trees/Animal Genes : TreeFamLIPJ
HOVERGENQ5W064
HOGENOMQ5W064
Homologs : HomoloGeneLIPJ
Homology/Alignments : Family Browser (UCSC)LIPJ
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLIPJ [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LIPJ
dbVarLIPJ
ClinVarLIPJ
1000_GenomesLIPJ 
Exome Variant ServerLIPJ
ExAC (Exome Aggregation Consortium)LIPJ (select the gene name)
Genetic variants : HAPMAP142910
Genomic Variants (DGV)LIPJ [DGVbeta]
DECIPHERLIPJ [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLIPJ 
Mutations
ICGC Data PortalLIPJ 
TCGA Data PortalLIPJ 
Broad Tumor PortalLIPJ
OASIS PortalLIPJ [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLIPJ  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLIPJ
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LIPJ
DgiDB (Drug Gene Interaction Database)LIPJ
DoCM (Curated mutations)LIPJ (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LIPJ (select a term)
intoGenLIPJ
Cancer3DLIPJ(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613921   
Orphanet
MedgenLIPJ
Genetic Testing Registry LIPJ
NextProtQ5W064 [Medical]
TSGene142910
GENETestsLIPJ
Target ValidationLIPJ
Huge Navigator LIPJ [HugePedia]
snp3D : Map Gene to Disease142910
BioCentury BCIQLIPJ
ClinGenLIPJ
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD142910
Chemical/Pharm GKB GenePA162394099
Clinical trialLIPJ
Miscellaneous
canSAR (ICR)LIPJ (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLIPJ
EVEXLIPJ
GoPubMedLIPJ
iHOPLIPJ
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:16:41 CEST 2017

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