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LIPK (lipase, family member K)

Identity

Alias_namesLIPL2
lipase-like, ab-hydrolase domain containing 2
Alias_symbol (synonym)bA186O14.2
Other alias
HGNC (Hugo) LIPK
LocusID (NCBI) 643414
Atlas_Id 66118
Location 10q23.31  [Link to chromosome band 10q23]
Location_base_pair Starts at 90484301 and ends at 90512513 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CTNNA3 (10q21.3) / LIPK (10q23.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LIPK   23444
Cards
Entrez_Gene (NCBI)LIPK  643414  lipase, family member K
AliasesLIPL2; bA186O14.2
GeneCards (Weizmann)LIPK
Ensembl hg19 (Hinxton)ENSG00000204021 [Gene_View]  chr10:90484301-90512513 [Contig_View]  LIPK [Vega]
Ensembl hg38 (Hinxton)ENSG00000204021 [Gene_View]  chr10:90484301-90512513 [Contig_View]  LIPK [Vega]
ICGC DataPortalENSG00000204021
TCGA cBioPortalLIPK
AceView (NCBI)LIPK
Genatlas (Paris)LIPK
WikiGenes643414
SOURCE (Princeton)LIPK
Genetics Home Reference (NIH)LIPK
Genomic and cartography
GoldenPath hg19 (UCSC)LIPK  -     chr10:90484301-90512513 +  10q23.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LIPK  -     10q23.31   [Description]    (hg38-Dec_2013)
EnsemblLIPK - 10q23.31 [CytoView hg19]  LIPK - 10q23.31 [CytoView hg38]
Mapping of homologs : NCBILIPK [Mapview hg19]  LIPK [Mapview hg38]
OMIM613922   
Gene and transcription
Genbank (Entrez)BC152924 EF426482
RefSeq transcript (Entrez)NM_001080518
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)LIPK
Cluster EST : UnigeneHs.632092 [ NCBI ]
CGAP (NCI)Hs.632092
Alternative Splicing GalleryENSG00000204021
Gene ExpressionLIPK [ NCBI-GEO ]   LIPK [ EBI - ARRAY_EXPRESS ]   LIPK [ SEEK ]   LIPK [ MEM ]
Gene Expression Viewer (FireBrowse)LIPK [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)643414
GTEX Portal (Tissue expression)LIPK
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VXJ0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VXJ0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VXJ0
Splice isoforms : SwissVarQ5VXJ0
Catalytic activity : Enzyme3.1.1.- [ Enzyme-Expasy ]   3.1.1.-3.1.1.- [ IntEnz-EBI ]   3.1.1.- [ BRENDA ]   3.1.1.- [ KEGG ]   
PhosPhoSitePlusQ5VXJ0
Domaine pattern : Prosite (Expaxy)LIPASE_SER (PS00120)   
Domains : Interpro (EBI)AB_hydrolase    AB_hydrolase_1    AB_hydrolase_lipase    Lipase_euk   
Domain families : Pfam (Sanger)Abhydro_lipase (PF04083)    Abhydrolase_1 (PF00561)   
Domain families : Pfam (NCBI)pfam04083    pfam00561   
Conserved Domain (NCBI)LIPK
DMDM Disease mutations643414
Blocks (Seattle)LIPK
SuperfamilyQ5VXJ0
Human Protein AtlasENSG00000204021
Peptide AtlasQ5VXJ0
IPIIPI00479714   
Protein Interaction databases
DIP (DOE-UCLA)Q5VXJ0
IntAct (EBI)Q5VXJ0
FunCoupENSG00000204021
BioGRIDLIPK
STRING (EMBL)LIPK
ZODIACLIPK
Ontologies - Pathways
QuickGOQ5VXJ0
Ontology : AmiGOextracellular region  lipid catabolic process  hydrolase activity, acting on ester bonds  
Ontology : EGO-EBIextracellular region  lipid catabolic process  hydrolase activity, acting on ester bonds  
NDEx NetworkLIPK
Atlas of Cancer Signalling NetworkLIPK
Wikipedia pathwaysLIPK
Orthology - Evolution
OrthoDB643414
GeneTree (enSembl)ENSG00000204021
Phylogenetic Trees/Animal Genes : TreeFamLIPK
HOVERGENQ5VXJ0
HOGENOMQ5VXJ0
Homologs : HomoloGeneLIPK
Homology/Alignments : Family Browser (UCSC)LIPK
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLIPK [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LIPK
dbVarLIPK
ClinVarLIPK
1000_GenomesLIPK 
Exome Variant ServerLIPK
ExAC (Exome Aggregation Consortium)LIPK (select the gene name)
Genetic variants : HAPMAP643414
Genomic Variants (DGV)LIPK [DGVbeta]
DECIPHER (Syndromes)10:90484301-90512513  ENSG00000204021
CONAN: Copy Number AnalysisLIPK 
Mutations
ICGC Data PortalLIPK 
TCGA Data PortalLIPK 
Broad Tumor PortalLIPK
OASIS PortalLIPK [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLIPK  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLIPK
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LIPK
DgiDB (Drug Gene Interaction Database)LIPK
DoCM (Curated mutations)LIPK (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LIPK (select a term)
intoGenLIPK
Cancer3DLIPK(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613922   
Orphanet
MedgenLIPK
Genetic Testing Registry LIPK
NextProtQ5VXJ0 [Medical]
TSGene643414
GENETestsLIPK
Huge Navigator LIPK [HugePedia]
snp3D : Map Gene to Disease643414
BioCentury BCIQLIPK
ClinGenLIPK
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD643414
Chemical/Pharm GKB GenePA162394100
Clinical trialLIPK
Miscellaneous
canSAR (ICR)LIPK (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLIPK
EVEXLIPK
GoPubMedLIPK
iHOPLIPK
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:14:32 CET 2017

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