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LIPM (lipase family member M)

Identity

Alias (NCBI)LIPL3
bA304I5.1
HGNC (Hugo) LIPM
HGNC Alias symbbA304I5.1
HGNC Previous nameLIPL3
HGNC Previous namelipase-like, ab-hydrolase domain containing 3
LocusID (NCBI) 340654
Atlas_Id 66119
Location 10q23.31  [Link to chromosome band 10q23]
Location_base_pair Starts at 88802730 and ends at 88820546 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)LIPM   23455
Cards
Entrez_Gene (NCBI)LIPM    lipase family member M
AliasesLIPL3; bA304I5.1
GeneCards (Weizmann)LIPM
Ensembl hg19 (Hinxton)ENSG00000173239 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173239 [Gene_View]  ENSG00000173239 [Sequence]  chr10:88802730-88820546 [Contig_View]  LIPM [Vega]
ICGC DataPortalENSG00000173239
TCGA cBioPortalLIPM
AceView (NCBI)LIPM
Genatlas (Paris)LIPM
SOURCE (Princeton)LIPM
Genetics Home Reference (NIH)LIPM
Genomic and cartography
GoldenPath hg38 (UCSC)LIPM  -     chr10:88802730-88820546 +  10q23.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LIPM  -     10q23.31   [Description]    (hg19-Feb_2009)
GoldenPathLIPM - 10q23.31 [CytoView hg19]  LIPM - 10q23.31 [CytoView hg38]
ImmunoBaseENSG00000173239
Genome Data Viewer NCBILIPM [Mapview hg19]  
OMIM613923   
Gene and transcription
Genbank (Entrez)BC157888 BC171908 EF426484
RefSeq transcript (Entrez)NM_001128215
Consensus coding sequences : CCDS (NCBI)LIPM
Gene ExpressionLIPM [ NCBI-GEO ]   LIPM [ EBI - ARRAY_EXPRESS ]   LIPM [ SEEK ]   LIPM [ MEM ]
Gene Expression Viewer (FireBrowse)LIPM [ Firebrowse - Broad ]
GenevisibleExpression of LIPM in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)340654
GTEX Portal (Tissue expression)LIPM
Human Protein AtlasENSG00000173239-LIPM [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VYY2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VYY2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VYY2
Catalytic activity : Enzyme3.1.1.- [ Enzyme-Expasy ]   3.1.1.-3.1.1.- [ IntEnz-EBI ]   3.1.1.- [ BRENDA ]   3.1.1.- [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusQ5VYY2
Domaine pattern : Prosite (Expaxy)LIPASE_SER (PS00120)   
Domains : Interpro (EBI)AB_hydrolase    AB_hydrolase_1    Lipase_euk   
Domain families : Pfam (Sanger)Abhydrolase_1 (PF00561)   
Domain families : Pfam (NCBI)pfam00561   
Conserved Domain (NCBI)LIPM
SuperfamilyQ5VYY2
AlphaFold pdb e-kbQ5VYY2   
Human Protein Atlas [tissue]ENSG00000173239-LIPM [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q5VYY2
IntAct (EBI)Q5VYY2
BioGRIDLIPM
STRING (EMBL)LIPM
ZODIACLIPM
Ontologies - Pathways
QuickGOQ5VYY2
Ontology : AmiGOextracellular region  lipid catabolic process  hydrolase activity, acting on ester bonds  cornification  
Ontology : EGO-EBIextracellular region  lipid catabolic process  hydrolase activity, acting on ester bonds  cornification  
NDEx NetworkLIPM
Atlas of Cancer Signalling NetworkLIPM
Wikipedia pathwaysLIPM
Orthology - Evolution
OrthoDB340654
GeneTree (enSembl)ENSG00000173239
Phylogenetic Trees/Animal Genes : TreeFamLIPM
Homologs : HomoloGeneLIPM
Homology/Alignments : Family Browser (UCSC)LIPM
Gene fusions - Rearrangements
Fusion : QuiverLIPM
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLIPM [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LIPM
dbVarLIPM
ClinVarLIPM
MonarchLIPM
1000_GenomesLIPM 
Exome Variant ServerLIPM
GNOMAD BrowserENSG00000173239
Varsome BrowserLIPM
ACMGLIPM variants
VarityQ5VYY2
Genomic Variants (DGV)LIPM [DGVbeta]
DECIPHERLIPM [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLIPM 
Mutations
ICGC Data PortalLIPM 
TCGA Data PortalLIPM 
Broad Tumor PortalLIPM
OASIS PortalLIPM [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLIPM  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DLIPM
Mutations and Diseases : HGMDLIPM
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaLIPM
DgiDB (Drug Gene Interaction Database)LIPM
DoCM (Curated mutations)LIPM
CIViC (Clinical Interpretations of Variants in Cancer)LIPM
Cancer3DLIPM
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613923   
Orphanet
DisGeNETLIPM
MedgenLIPM
Genetic Testing Registry LIPM
NextProtQ5VYY2 [Medical]
GENETestsLIPM
Target ValidationLIPM
Huge Navigator LIPM [HugePedia]
ClinGenLIPM
Clinical trials, drugs, therapy
MyCancerGenomeLIPM
Protein Interactions : CTDLIPM
Pharm GKB GenePA162394101
PharosQ5VYY2
Clinical trialLIPM
Miscellaneous
canSAR (ICR)LIPM
HarmonizomeLIPM
DataMed IndexLIPM
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXLIPM
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:00:54 CEST 2021

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