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LIPM (lipase family member M)

Identity

Alias_namesLIPL3
lipase-like, ab-hydrolase domain containing 3
Alias_symbol (synonym)bA304I5.1
Other alias
HGNC (Hugo) LIPM
LocusID (NCBI) 340654
Atlas_Id 66119
Location 10q23.31  [Link to chromosome band 10q23]
Location_base_pair Starts at 88802730 and ends at 88820546 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LIPM   23455
Cards
Entrez_Gene (NCBI)LIPM  340654  lipase family member M
AliasesLIPL3; bA304I5.1
GeneCards (Weizmann)LIPM
Ensembl hg19 (Hinxton)ENSG00000173239 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173239 [Gene_View]  chr10:88802730-88820546 [Contig_View]  LIPM [Vega]
ICGC DataPortalENSG00000173239
TCGA cBioPortalLIPM
AceView (NCBI)LIPM
Genatlas (Paris)LIPM
WikiGenes340654
SOURCE (Princeton)LIPM
Genetics Home Reference (NIH)LIPM
Genomic and cartography
GoldenPath hg38 (UCSC)LIPM  -     chr10:88802730-88820546 +  10q23.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LIPM  -     10q23.31   [Description]    (hg19-Feb_2009)
EnsemblLIPM - 10q23.31 [CytoView hg19]  LIPM - 10q23.31 [CytoView hg38]
Mapping of homologs : NCBILIPM [Mapview hg19]  LIPM [Mapview hg38]
OMIM613923   
Gene and transcription
Genbank (Entrez)BC157888 BC171908 EF426484
RefSeq transcript (Entrez)NM_001128215
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LIPM
Cluster EST : UnigeneHs.55118 [ NCBI ]
CGAP (NCI)Hs.55118
Alternative Splicing GalleryENSG00000173239
Gene ExpressionLIPM [ NCBI-GEO ]   LIPM [ EBI - ARRAY_EXPRESS ]   LIPM [ SEEK ]   LIPM [ MEM ]
Gene Expression Viewer (FireBrowse)LIPM [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)340654
GTEX Portal (Tissue expression)LIPM
Human Protein AtlasENSG00000173239-LIPM [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VYY2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VYY2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VYY2
Splice isoforms : SwissVarQ5VYY2
Catalytic activity : Enzyme3.1.1.- [ Enzyme-Expasy ]   3.1.1.-3.1.1.- [ IntEnz-EBI ]   3.1.1.- [ BRENDA ]   3.1.1.- [ KEGG ]   
PhosPhoSitePlusQ5VYY2
Domaine pattern : Prosite (Expaxy)LIPASE_SER (PS00120)   
Domains : Interpro (EBI)AB_hydrolase    AB_hydrolase_1    Lipase_euk   
Domain families : Pfam (Sanger)Abhydrolase_1 (PF00561)   
Domain families : Pfam (NCBI)pfam00561   
Conserved Domain (NCBI)LIPM
DMDM Disease mutations340654
Blocks (Seattle)LIPM
SuperfamilyQ5VYY2
Human Protein Atlas [tissue]ENSG00000173239-LIPM [tissue]
Peptide AtlasQ5VYY2
IPIIPI01015896   IPI00307230   
Protein Interaction databases
DIP (DOE-UCLA)Q5VYY2
IntAct (EBI)Q5VYY2
FunCoupENSG00000173239
BioGRIDLIPM
STRING (EMBL)LIPM
ZODIACLIPM
Ontologies - Pathways
QuickGOQ5VYY2
Ontology : AmiGOlipoprotein lipase activity  extracellular region  lipid catabolic process  lipid digestion  
Ontology : EGO-EBIlipoprotein lipase activity  extracellular region  lipid catabolic process  lipid digestion  
NDEx NetworkLIPM
Atlas of Cancer Signalling NetworkLIPM
Wikipedia pathwaysLIPM
Orthology - Evolution
OrthoDB340654
GeneTree (enSembl)ENSG00000173239
Phylogenetic Trees/Animal Genes : TreeFamLIPM
HOVERGENQ5VYY2
HOGENOMQ5VYY2
Homologs : HomoloGeneLIPM
Homology/Alignments : Family Browser (UCSC)LIPM
Gene fusions - Rearrangements
Tumor Fusion PortalLIPM
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLIPM [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LIPM
dbVarLIPM
ClinVarLIPM
1000_GenomesLIPM 
Exome Variant ServerLIPM
ExAC (Exome Aggregation Consortium)ENSG00000173239
GNOMAD BrowserENSG00000173239
Genetic variants : HAPMAP340654
Genomic Variants (DGV)LIPM [DGVbeta]
DECIPHERLIPM [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLIPM 
Mutations
ICGC Data PortalLIPM 
TCGA Data PortalLIPM 
Broad Tumor PortalLIPM
OASIS PortalLIPM [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLIPM  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLIPM
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LIPM
DgiDB (Drug Gene Interaction Database)LIPM
DoCM (Curated mutations)LIPM (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LIPM (select a term)
intoGenLIPM
Cancer3DLIPM(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613923   
Orphanet
DisGeNETLIPM
MedgenLIPM
Genetic Testing Registry LIPM
NextProtQ5VYY2 [Medical]
TSGene340654
GENETestsLIPM
Target ValidationLIPM
Huge Navigator LIPM [HugePedia]
snp3D : Map Gene to Disease340654
BioCentury BCIQLIPM
ClinGenLIPM
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD340654
Chemical/Pharm GKB GenePA162394101
Clinical trialLIPM
Miscellaneous
canSAR (ICR)LIPM (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLIPM
EVEXLIPM
GoPubMedLIPM
iHOPLIPM
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:21:58 CET 2017

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