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LIPN (lipase family member N)

Identity

Alias_namesLIPL4
lipase-like, ab-hydrolase domain containing 4
Alias_symbol (synonym)bA186O14.3
Other aliasARCI8
LI4
HGNC (Hugo) LIPN
LocusID (NCBI) 643418
Atlas_Id 66120
Location 10q23.31  [Link to chromosome band 10q23]
Location_base_pair Starts at 88761406 and ends at 88778242 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LIPN   23452
Cards
Entrez_Gene (NCBI)LIPN  643418  lipase family member N
AliasesARCI8; LI4; LIPL4; bA186O14.3
GeneCards (Weizmann)LIPN
Ensembl hg19 (Hinxton)ENSG00000204020 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204020 [Gene_View]  chr10:88761406-88778242 [Contig_View]  LIPN [Vega]
ICGC DataPortalENSG00000204020
TCGA cBioPortalLIPN
AceView (NCBI)LIPN
Genatlas (Paris)LIPN
WikiGenes643418
SOURCE (Princeton)LIPN
Genetics Home Reference (NIH)LIPN
Genomic and cartography
GoldenPath hg38 (UCSC)LIPN  -     chr10:88761406-88778242 +  10q23.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LIPN  -     10q23.31   [Description]    (hg19-Feb_2009)
EnsemblLIPN - 10q23.31 [CytoView hg19]  LIPN - 10q23.31 [CytoView hg38]
Mapping of homologs : NCBILIPN [Mapview hg19]  LIPN [Mapview hg38]
OMIM613924   613943   
Gene and transcription
Genbank (Entrez)EF426483
RefSeq transcript (Entrez)NM_001102469
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LIPN
Cluster EST : UnigeneHs.632091 [ NCBI ]
CGAP (NCI)Hs.632091
Alternative Splicing GalleryENSG00000204020
Gene ExpressionLIPN [ NCBI-GEO ]   LIPN [ EBI - ARRAY_EXPRESS ]   LIPN [ SEEK ]   LIPN [ MEM ]
Gene Expression Viewer (FireBrowse)LIPN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)643418
GTEX Portal (Tissue expression)LIPN
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VXI9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VXI9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VXI9
Splice isoforms : SwissVarQ5VXI9
Catalytic activity : Enzyme3.1.1.- [ Enzyme-Expasy ]   3.1.1.-3.1.1.- [ IntEnz-EBI ]   3.1.1.- [ BRENDA ]   3.1.1.- [ KEGG ]   
PhosPhoSitePlusQ5VXI9
Domaine pattern : Prosite (Expaxy)LIPASE_SER (PS00120)   
Domains : Interpro (EBI)AB_hydrolase    AB_hydrolase_1    Lipase_euk   
Domain families : Pfam (Sanger)Abhydrolase_1 (PF00561)   
Domain families : Pfam (NCBI)pfam00561   
Conserved Domain (NCBI)LIPN
DMDM Disease mutations643418
Blocks (Seattle)LIPN
SuperfamilyQ5VXI9
Human Protein AtlasENSG00000204020
Peptide AtlasQ5VXI9
IPIIPI00855741   
Protein Interaction databases
DIP (DOE-UCLA)Q5VXI9
IntAct (EBI)Q5VXI9
FunCoupENSG00000204020
BioGRIDLIPN
STRING (EMBL)LIPN
ZODIACLIPN
Ontologies - Pathways
QuickGOQ5VXI9
Ontology : AmiGOlipoprotein lipase activity  extracellular region  lipid catabolic process  lipid digestion  
Ontology : EGO-EBIlipoprotein lipase activity  extracellular region  lipid catabolic process  lipid digestion  
NDEx NetworkLIPN
Atlas of Cancer Signalling NetworkLIPN
Wikipedia pathwaysLIPN
Orthology - Evolution
OrthoDB643418
GeneTree (enSembl)ENSG00000204020
Phylogenetic Trees/Animal Genes : TreeFamLIPN
HOVERGENQ5VXI9
HOGENOMQ5VXI9
Homologs : HomoloGeneLIPN
Homology/Alignments : Family Browser (UCSC)LIPN
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLIPN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LIPN
dbVarLIPN
ClinVarLIPN
1000_GenomesLIPN 
Exome Variant ServerLIPN
ExAC (Exome Aggregation Consortium)LIPN (select the gene name)
Genetic variants : HAPMAP643418
Genomic Variants (DGV)LIPN [DGVbeta]
DECIPHERLIPN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLIPN 
Mutations
ICGC Data PortalLIPN 
TCGA Data PortalLIPN 
Broad Tumor PortalLIPN
OASIS PortalLIPN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLIPN  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLIPN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LIPN
DgiDB (Drug Gene Interaction Database)LIPN
DoCM (Curated mutations)LIPN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LIPN (select a term)
intoGenLIPN
Cancer3DLIPN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613924    613943   
Orphanet265   
MedgenLIPN
Genetic Testing Registry LIPN
NextProtQ5VXI9 [Medical]
TSGene643418
GENETestsLIPN
Target ValidationLIPN
Huge Navigator LIPN [HugePedia]
snp3D : Map Gene to Disease643418
BioCentury BCIQLIPN
ClinGenLIPN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD643418
Chemical/Pharm GKB GenePA162394123
Clinical trialLIPN
Miscellaneous
canSAR (ICR)LIPN (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLIPN
EVEXLIPN
GoPubMedLIPN
iHOPLIPN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:59:43 CEST 2017

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