Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LIPT2 (lipoyl(octanoyl) transferase 2 (putative))

Identity

Other alias-
HGNC (Hugo) LIPT2
LocusID (NCBI) 387787
Atlas_Id 66122
Location 11q13.4  [Link to chromosome band 11q13]
Location_base_pair Starts at 74490511 and ends at 74493713 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LIPT2   37216
LRG (Locus Reference Genomic)LRG_1089
Cards
Entrez_Gene (NCBI)LIPT2  387787  lipoyl(octanoyl) transferase 2 (putative)
Aliases
GeneCards (Weizmann)LIPT2
Ensembl hg19 (Hinxton)ENSG00000175536 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000175536 [Gene_View]  chr11:74490511-74493713 [Contig_View]  LIPT2 [Vega]
ICGC DataPortalENSG00000175536
TCGA cBioPortalLIPT2
AceView (NCBI)LIPT2
Genatlas (Paris)LIPT2
WikiGenes387787
SOURCE (Princeton)LIPT2
Genetics Home Reference (NIH)LIPT2
Genomic and cartography
GoldenPath hg38 (UCSC)LIPT2  -     chr11:74490511-74493713 -  11q13.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LIPT2  -     11q13.4   [Description]    (hg19-Feb_2009)
EnsemblLIPT2 - 11q13.4 [CytoView hg19]  LIPT2 - 11q13.4 [CytoView hg38]
Mapping of homologs : NCBILIPT2 [Mapview hg19]  LIPT2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)CN348282 CX752266 DY654619 HY025586
RefSeq transcript (Entrez)NM_001144869 NM_001329941 NM_001329942
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LIPT2
Cluster EST : UnigeneHs.591971 [ NCBI ]
CGAP (NCI)Hs.591971
Alternative Splicing GalleryENSG00000175536
Gene ExpressionLIPT2 [ NCBI-GEO ]   LIPT2 [ EBI - ARRAY_EXPRESS ]   LIPT2 [ SEEK ]   LIPT2 [ MEM ]
Gene Expression Viewer (FireBrowse)LIPT2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)387787
GTEX Portal (Tissue expression)LIPT2
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NK58   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NK58  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NK58
Splice isoforms : SwissVarA6NK58
Catalytic activity : Enzyme2.3.1.181 [ Enzyme-Expasy ]   2.3.1.1812.3.1.181 [ IntEnz-EBI ]   2.3.1.181 [ BRENDA ]   2.3.1.181 [ KEGG ]   
PhosPhoSitePlusA6NK58
Domaine pattern : Prosite (Expaxy)BPL_LPL_CATALYTIC (PS51733)   
Domains : Interpro (EBI)BPL_LPL_catalytic    Octanoyltransferase   
Domain families : Pfam (Sanger)BPL_LplA_LipB (PF03099)   
Domain families : Pfam (NCBI)pfam03099   
Conserved Domain (NCBI)LIPT2
DMDM Disease mutations387787
Blocks (Seattle)LIPT2
SuperfamilyA6NK58
Human Protein AtlasENSG00000175536
Peptide AtlasA6NK58
IPIIPI00398926   IPI00981981   IPI00983816   
Protein Interaction databases
DIP (DOE-UCLA)A6NK58
IntAct (EBI)A6NK58
FunCoupENSG00000175536
BioGRIDLIPT2
STRING (EMBL)LIPT2
ZODIACLIPT2
Ontologies - Pathways
QuickGOA6NK58
Ontology : AmiGOmitochondrial matrix  cellular protein modification process  lipoate biosynthetic process  octanoyltransferase activity  ligase activity  lipoyl(octanoyl) transferase activity  glyoxylate metabolic process  
Ontology : EGO-EBImitochondrial matrix  cellular protein modification process  lipoate biosynthetic process  octanoyltransferase activity  ligase activity  lipoyl(octanoyl) transferase activity  glyoxylate metabolic process  
Pathways : KEGGLipoic acid metabolism   
NDEx NetworkLIPT2
Atlas of Cancer Signalling NetworkLIPT2
Wikipedia pathwaysLIPT2
Orthology - Evolution
OrthoDB387787
GeneTree (enSembl)ENSG00000175536
Phylogenetic Trees/Animal Genes : TreeFamLIPT2
HOVERGENA6NK58
HOGENOMA6NK58
Homologs : HomoloGeneLIPT2
Homology/Alignments : Family Browser (UCSC)LIPT2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLIPT2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LIPT2
dbVarLIPT2
ClinVarLIPT2
1000_GenomesLIPT2 
Exome Variant ServerLIPT2
ExAC (Exome Aggregation Consortium)LIPT2 (select the gene name)
Genetic variants : HAPMAP387787
Genomic Variants (DGV)LIPT2 [DGVbeta]
DECIPHERLIPT2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLIPT2 
Mutations
ICGC Data PortalLIPT2 
TCGA Data PortalLIPT2 
Broad Tumor PortalLIPT2
OASIS PortalLIPT2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLIPT2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLIPT2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LIPT2
DgiDB (Drug Gene Interaction Database)LIPT2
DoCM (Curated mutations)LIPT2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LIPT2 (select a term)
intoGenLIPT2
Cancer3DLIPT2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet23546   
MedgenLIPT2
Genetic Testing Registry LIPT2
NextProtA6NK58 [Medical]
TSGene387787
GENETestsLIPT2
Target ValidationLIPT2
Huge Navigator LIPT2 [HugePedia]
snp3D : Map Gene to Disease387787
BioCentury BCIQLIPT2
ClinGenLIPT2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD387787
Chemical/Pharm GKB GenePA165543447
Clinical trialLIPT2
Miscellaneous
canSAR (ICR)LIPT2 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLIPT2
EVEXLIPT2
GoPubMedLIPT2
iHOPLIPT2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 16:21:18 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.