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LITAF (lipopolysaccharide-induced TNF factor)

Identity

Other namesPIG7
SIMPLE
TP53I7
HGNC (Hugo) LITAF
LocusID (NCBI) 9516
Location 16p13.13
Location_base_pair Starts at 11641578 and ends at 11680806 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)LITAF   16841
Entrez_Gene (NCBI)LITAF  9516  lipopolysaccharide-induced TNF factor
Cards
GeneCards (Weizmann)LITAF
Ensembl (Hinxton)ENSG00000189067 [Gene_View]  chr16:11641578-11680806 [Contig_View]  LITAF [Vega]
AceView (NCBI)LITAF
Genatlas (Paris)LITAF
SOURCE (Stanford)NM_001136472 NM_001136473 NM_004862
Genomic and cartography
GoldenPath (UCSC)LITAF  -  16p13.13   chr16:11641578-11680806 -  16p13.13   [Description]    (hg19-Feb_2009)
EnsemblLITAF - 16p13.13 [CytoView]
Mapping of homologs : NCBILITAF [Mapview]
OMIM601098   603795   
Gene and transcription
Genbank (Entrez)AA625937 AB034747 AF010312 AK095955 AK130788
RefSeq transcript (SRS)NM_001136472 NM_001136473 NM_004862
RefSeq transcript (Entrez)NM_001136472 NM_001136473 NM_004862
RefSeq genomic (SRS)AC_000148 NC_000016 NC_018927 NG_009008 NT_010393 NW_001838343 NW_004078085
RefSeq genomic (Entrez)AC_000148 NC_000016 NC_018927 NG_009008 NT_010393 NW_001838343 NW_004078085
Consensus coding sequences : CCDS (NCBI)LITAF
Cluster EST : UnigeneHs.459940 [ SRS ] Hs.459940 [ NCBI ]
CGAP (NCI)Hs.459940
Alternative Splicing : Fast-db (Paris)GSHG0011632
Alternative Splicing GalleryENSG00000189067
Gene ExpressionLITAF [ NCBI-GEO ]   LITAF [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99732 (SRS) Q99732 (Uniprot)
NextProtQ99732
With graphics : InterProQ99732
Splice isoforms : SwissVarQ99732(Swissvar)
Domains : Interpro (SRS)LITAF   
Domains : Interpro (EBI)LITAF   
Related proteins : CluSTrQ99732
Domain families : Pfam (SRS)zf-LITAF-like (PF10601)   
Domain families : Pfam (Sanger)zf-LITAF-like (PF10601)   
Domain families : Pfam (NCBI)pfam10601   
Domain families : Smart (EMBL)LITAF (SM00714)  
DMDM9516
Blocks (Seattle)Q99732
Human Protein AtlasENSG00000189067
HPRD10354
IPIIPI00645256   IPI00017762   IPI00914962   
Protein Interaction databases
DIP (DOE-UCLA)Q99732
IntAct (EBI)Q99732
FunCoupENSG00000189067
REACTOMELITAF
Protein Interaction Database9516
BioGRIDLITAF
InParanoidQ99732
Interologous Interaction database Q99732
IntegromeDBLITAF
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)LITAF
SNP (GeneSNP Utah)LITAF
SNP : HGBaseLITAF
Genetic variants : HAPMAPLITAF
Somatic Mutations in Cancer : COSMICLITAF 
CONAN: Copy Number AnalysisLITAF 
Mutations and Diseases : HGMDLITAF
OMIM601098    603795   
GENETests601098    603795   
Disease Genetic AssociationLITAF
Huge Navigator LITAF [HugePedia]  LITAF [HugeCancerGEM]
Genomic VariantsLITAF  LITAF [DGVbeta]
ClinVarLITAF
snp3D : Map Gene to Disease9516
General knowledge
Homologs : HomoloGeneLITAF
Homology/Alignments : Family Browser (UCSC)LITAF
Phylogenetic Trees/Animal Genes : TreeFamLITAF
Chemical/Protein Interactions : CTD9516
Chemical/Pharm GKB GenePA134879224
Clinical trialLITAF
Cancer Resource (Charite)ENSG00000189067
Ontology : AmiGOregulation of cytokine production  signal transducer activity  protein binding  lysosomal membrane  Golgi apparatus  Golgi apparatus  plasma membrane  transcription, DNA-dependent  regulation of transcription from RNA polymerase II promoter  apoptotic process  signal transduction  negative regulation of NF-kappaB import into nucleus  positive regulation of I-kappaB kinase/NF-kappaB cascade  WW domain binding  cellular response to lipopolysaccharide  
Ontology : EGO-EBIregulation of cytokine production  signal transducer activity  protein binding  lysosomal membrane  Golgi apparatus  Golgi apparatus  plasma membrane  transcription, DNA-dependent  regulation of transcription from RNA polymerase II promoter  apoptotic process  signal transduction  negative regulation of NF-kappaB import into nucleus  positive regulation of I-kappaB kinase/NF-kappaB cascade  WW domain binding  cellular response to lipopolysaccharide  
Other databases
Probes
Litterature
PubMed47 Pubmed reference(s) in Entrez
PubGeneLITAF
iHOPLITAF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 14 17:42:23 CEST 2013
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