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LITAF (lipopolysaccharide induced TNF factor)

Identity

Alias_nameslipopolysaccharide-induced TNF factor
Alias_symbol (synonym)PIG7
SIMPLE
FLJ38636
TP53I7
HGNC (Hugo) LITAF
LocusID (NCBI) 9516
Atlas_Id 41161
Location 16p13.13  [Link to chromosome band 16p13]
Location_base_pair Starts at 11641578 and ends at 11680806 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CLEC16A (16p13.13) / LITAF (16p13.13)LITAF (16p13.13) / CD68 (17p13.1)LITAF (16p13.13) / DBNL (7p13)
LITAF (16p13.13) / HLA-DRA (6p21.32)RBMS2 (12q13.3) / LITAF (16p13.13)CLEC16A 16p13.13 / LITAF 16p13.13

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LITAF   16841
LRG (Locus Reference Genomic)LRG_253
Cards
Entrez_Gene (NCBI)LITAF  9516  lipopolysaccharide induced TNF factor
AliasesPIG7; SIMPLE; TP53I7
GeneCards (Weizmann)LITAF
Ensembl hg19 (Hinxton)ENSG00000189067 [Gene_View]  chr16:11641578-11680806 [Contig_View]  LITAF [Vega]
Ensembl hg38 (Hinxton)ENSG00000189067 [Gene_View]  chr16:11641578-11680806 [Contig_View]  LITAF [Vega]
ICGC DataPortalENSG00000189067
TCGA cBioPortalLITAF
AceView (NCBI)LITAF
Genatlas (Paris)LITAF
WikiGenes9516
SOURCE (Princeton)LITAF
Genetics Home Reference (NIH)LITAF
Genomic and cartography
GoldenPath hg19 (UCSC)LITAF  -     chr16:11641578-11680806 -  16p13.13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LITAF  -     16p13.13   [Description]    (hg38-Dec_2013)
EnsemblLITAF - 16p13.13 [CytoView hg19]  LITAF - 16p13.13 [CytoView hg38]
Mapping of homologs : NCBILITAF [Mapview hg19]  LITAF [Mapview hg38]
OMIM601098   603795   
Gene and transcription
Genbank (Entrez)AA625937 AB034747 AF010312 AK095955 AK130788
RefSeq transcript (Entrez)NM_001136472 NM_001136473 NM_004862
RefSeq genomic (Entrez)NC_000016 NC_018927 NG_009008 NT_010393 NW_004929400
Consensus coding sequences : CCDS (NCBI)LITAF
Cluster EST : UnigeneHs.459940 [ NCBI ]
CGAP (NCI)Hs.459940
Alternative Splicing GalleryENSG00000189067
Gene ExpressionLITAF [ NCBI-GEO ]   LITAF [ EBI - ARRAY_EXPRESS ]   LITAF [ SEEK ]   LITAF [ MEM ]
Gene Expression Viewer (FireBrowse)LITAF [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9516
GTEX Portal (Tissue expression)LITAF
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99732   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99732  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99732
Splice isoforms : SwissVarQ99732
PhosPhoSitePlusQ99732
Domains : Interpro (EBI)LITAF   
Domain families : Pfam (Sanger)zf-LITAF-like (PF10601)   
Domain families : Pfam (NCBI)pfam10601   
Domain families : Smart (EMBL)LITAF (SM00714)  
Conserved Domain (NCBI)LITAF
DMDM Disease mutations9516
Blocks (Seattle)LITAF
SuperfamilyQ99732
Human Protein AtlasENSG00000189067
Peptide AtlasQ99732
HPRD10354
IPIIPI00645256   IPI00017762   IPI00914962   
Protein Interaction databases
DIP (DOE-UCLA)Q99732
IntAct (EBI)Q99732
FunCoupENSG00000189067
BioGRIDLITAF
STRING (EMBL)LITAF
ZODIACLITAF
Ontologies - Pathways
QuickGOQ99732
Ontology : AmiGOregulation of cytokine production  signal transducer activity  protein binding  nucleoplasm  cytoplasm  lysosomal membrane  Golgi apparatus  Golgi apparatus  plasma membrane  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  apoptotic process  signal transduction  aging  negative regulation of NF-kappaB import into nucleus  positive regulation of I-kappaB kinase/NF-kappaB signaling  intracellular membrane-bounded organelle  WW domain binding  cellular response to lipopolysaccharide  
Ontology : EGO-EBIregulation of cytokine production  signal transducer activity  protein binding  nucleoplasm  cytoplasm  lysosomal membrane  Golgi apparatus  Golgi apparatus  plasma membrane  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  apoptotic process  signal transduction  aging  negative regulation of NF-kappaB import into nucleus  positive regulation of I-kappaB kinase/NF-kappaB signaling  intracellular membrane-bounded organelle  WW domain binding  cellular response to lipopolysaccharide  
NDEx NetworkLITAF
Atlas of Cancer Signalling NetworkLITAF
Wikipedia pathwaysLITAF
Orthology - Evolution
OrthoDB9516
GeneTree (enSembl)ENSG00000189067
Phylogenetic Trees/Animal Genes : TreeFamLITAF
HOVERGENQ99732
HOGENOMQ99732
Homologs : HomoloGeneLITAF
Homology/Alignments : Family Browser (UCSC)LITAF
Gene fusions - Rearrangements
Fusion : MitelmanCLEC16A/LITAF [16p13.13/16p13.13]  [t(16;16)(p13;p13)]  
Fusion : MitelmanRBMS2/LITAF [12q13.3/16p13.13]  [t(12;16)(q13;p13)]  
Fusion: TCGACLEC16A 16p13.13 LITAF 16p13.13 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLITAF [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LITAF
dbVarLITAF
ClinVarLITAF
1000_GenomesLITAF 
Exome Variant ServerLITAF
ExAC (Exome Aggregation Consortium)LITAF (select the gene name)
Genetic variants : HAPMAP9516
Genomic Variants (DGV)LITAF [DGVbeta]
DECIPHER (Syndromes)16:11641578-11680806  ENSG00000189067
CONAN: Copy Number AnalysisLITAF 
Mutations
ICGC Data PortalLITAF 
TCGA Data PortalLITAF 
Broad Tumor PortalLITAF
OASIS PortalLITAF [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLITAF  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLITAF
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)Leiden Muscular Dystrophy pages
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LITAF
DgiDB (Drug Gene Interaction Database)LITAF
DoCM (Curated mutations)LITAF (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LITAF (select a term)
intoGenLITAF
Cancer3DLITAF(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601098    603795   
Orphanet14794   
MedgenLITAF
Genetic Testing Registry LITAF
NextProtQ99732 [Medical]
TSGene9516
GENETestsLITAF
Huge Navigator LITAF [HugePedia]
snp3D : Map Gene to Disease9516
BioCentury BCIQLITAF
ClinGenLITAF (curated)
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9516
Chemical/Pharm GKB GenePA134879224
Clinical trialLITAF
Miscellaneous
canSAR (ICR)LITAF (select the gene name)
Probes
Litterature
PubMed62 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLITAF
EVEXLITAF
GoPubMedLITAF
iHOPLITAF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Nov 18 19:41:57 CET 2016

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