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LITAF (lipopolysaccharide-induced TNF factor)

Identity

Other namesPIG7
SIMPLE
TP53I7
HGNC (Hugo) LITAF
LocusID (NCBI) 9516
Location 16p13.13
Location_base_pair Starts at 11641578 and ends at 11680806 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)LITAF   16841
Cards
Entrez_Gene (NCBI)LITAF  9516  lipopolysaccharide-induced TNF factor
GeneCards (Weizmann)LITAF
Ensembl (Hinxton)ENSG00000189067 [Gene_View]  chr16:11641578-11680806 [Contig_View]  LITAF [Vega]
ICGC DataPortalENSG00000189067
cBioPortalLITAF
AceView (NCBI)LITAF
Genatlas (Paris)LITAF
WikiGenes9516
SOURCE (Princeton)NM_001136472 NM_001136473 NM_004862
Genomic and cartography
GoldenPath (UCSC)LITAF  -  16p13.13   chr16:11641578-11680806 -  16p13.13   [Description]    (hg19-Feb_2009)
EnsemblLITAF - 16p13.13 [CytoView]
Mapping of homologs : NCBILITAF [Mapview]
OMIM601098   603795   
Gene and transcription
Genbank (Entrez)AA625937 AB034747 AF010312 AK095955 AK130788
RefSeq transcript (Entrez)NM_001136472 NM_001136473 NM_004862
RefSeq genomic (Entrez)AC_000148 NC_000016 NC_018927 NG_009008 NT_010393 NW_001838343 NW_004929400
Consensus coding sequences : CCDS (NCBI)LITAF
Cluster EST : UnigeneHs.459940 [ NCBI ]
CGAP (NCI)Hs.459940
Alternative Splicing : Fast-db (Paris)GSHG0011632
Alternative Splicing GalleryENSG00000189067
Gene ExpressionLITAF [ NCBI-GEO ]     LITAF [ SEEK ]   LITAF [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99732 (Uniprot)
NextProtQ99732  [Medical]
With graphics : InterProQ99732
Splice isoforms : SwissVarQ99732 (Swissvar)
Domains : Interpro (EBI)LITAF [organisation]  
Related proteins : CluSTrQ99732
Domain families : Pfam (Sanger)zf-LITAF-like (PF10601)   
Domain families : Pfam (NCBI)pfam10601   
Domain families : Smart (EMBL)LITAF (SM00714)  
DMDM Disease mutations9516
Blocks (Seattle)Q99732
Human Protein AtlasENSG00000189067 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ99732
HPRD10354
IPIIPI00645256   IPI00017762   IPI00914962   
Protein Interaction databases
DIP (DOE-UCLA)Q99732
IntAct (EBI)Q99732
FunCoupENSG00000189067
BioGRIDLITAF
InParanoidQ99732
Interologous Interaction database Q99732
IntegromeDBLITAF
STRING (EMBL)LITAF
Ontologies - Pathways
Ontology : AmiGOregulation of cytokine production  signal transducer activity  protein binding  nucleus  nucleolus  cytoplasm  lysosomal membrane  Golgi apparatus  Golgi apparatus  plasma membrane  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  apoptotic process  signal transduction  aging  negative regulation of NF-kappaB import into nucleus  positive regulation of I-kappaB kinase/NF-kappaB signaling  intracellular membrane-bounded organelle  WW domain binding  cellular response to lipopolysaccharide  
Ontology : EGO-EBIregulation of cytokine production  signal transducer activity  protein binding  nucleus  nucleolus  cytoplasm  lysosomal membrane  Golgi apparatus  Golgi apparatus  plasma membrane  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  apoptotic process  signal transduction  aging  negative regulation of NF-kappaB import into nucleus  positive regulation of I-kappaB kinase/NF-kappaB signaling  intracellular membrane-bounded organelle  WW domain binding  cellular response to lipopolysaccharide  
Protein Interaction DatabaseLITAF
Wikipedia pathwaysLITAF
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)LITAF
snp3D : Map Gene to Disease9516
SNP (GeneSNP Utah)LITAF
SNP : HGBaseLITAF
Genetic variants : HAPMAPLITAF
Exome VariantLITAF
1000_GenomesLITAF 
ICGC programENSG00000189067 
Somatic Mutations in Cancer : COSMICLITAF 
CONAN: Copy Number AnalysisLITAF 
Mutations and Diseases : HGMDLITAF
Genomic VariantsLITAF  LITAF [DGVbeta]
dbVarLITAF
ClinVarLITAF
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM601098    603795   
MedgenLITAF
GENETestsLITAF
Disease Genetic AssociationLITAF
Huge Navigator LITAF [HugePedia]  LITAF [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneLITAF
Homology/Alignments : Family Browser (UCSC)LITAF
Phylogenetic Trees/Animal Genes : TreeFamLITAF
Chemical/Protein Interactions : CTD9516
Chemical/Pharm GKB GenePA134879224
Clinical trialLITAF
Cancer Resource (Charite)ENSG00000189067
Other databases
Probes
Litterature
PubMed55 Pubmed reference(s) in Entrez
CoreMineLITAF
iHOPLITAF
OncoSearchLITAF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jul 30 14:02:25 CEST 2014

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