Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LIX1 (Lix1 homolog (chicken))

Identity

Alias_namesC5orf11
chromosome 5 open reading frame 11
Lix1 homolog (mouse)
Lix1 homolog (chicken)
Alias_symbol (synonym)Lft
Other alias
HGNC (Hugo) LIX1
LocusID (NCBI) 167410
Atlas_Id 66123
Location 5q15  [Link to chromosome band 5q15]
Location_base_pair Starts at 96427574 and ends at 96478520 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LIX1   18581
Cards
Entrez_Gene (NCBI)LIX1  167410  Lix1 homolog (chicken)
AliasesC5orf11
GeneCards (Weizmann)LIX1
Ensembl hg19 (Hinxton)ENSG00000145721 [Gene_View]  chr5:96427574-96478520 [Contig_View]  LIX1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000145721 [Gene_View]  chr5:96427574-96478520 [Contig_View]  LIX1 [Vega]
ICGC DataPortalENSG00000145721
TCGA cBioPortalLIX1
AceView (NCBI)LIX1
Genatlas (Paris)LIX1
WikiGenes167410
SOURCE (Princeton)LIX1
Genetics Home Reference (NIH)LIX1
Genomic and cartography
GoldenPath hg19 (UCSC)LIX1  -     chr5:96427574-96478520 -  5q15   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LIX1  -     5q15   [Description]    (hg38-Dec_2013)
EnsemblLIX1 - 5q15 [CytoView hg19]  LIX1 - 5q15 [CytoView hg38]
Mapping of homologs : NCBILIX1 [Mapview hg19]  LIX1 [Mapview hg38]
OMIM610466   
Gene and transcription
Genbank (Entrez)AK098400 AK291034 AK307885 BC036467
RefSeq transcript (Entrez)NM_153234
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_034772 NW_004929323
Consensus coding sequences : CCDS (NCBI)LIX1
Cluster EST : UnigeneHs.656702 [ NCBI ]
CGAP (NCI)Hs.656702
Alternative Splicing GalleryENSG00000145721
Gene ExpressionLIX1 [ NCBI-GEO ]   LIX1 [ EBI - ARRAY_EXPRESS ]   LIX1 [ SEEK ]   LIX1 [ MEM ]
Gene Expression Viewer (FireBrowse)LIX1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)167410
GTEX Portal (Tissue expression)LIX1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N485   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N485  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N485
Splice isoforms : SwissVarQ8N485
PhosPhoSitePlusQ8N485
Domains : Interpro (EBI)LIX1   
Domain families : Pfam (Sanger)LIX1 (PF14954)   
Domain families : Pfam (NCBI)pfam14954   
Conserved Domain (NCBI)LIX1
DMDM Disease mutations167410
Blocks (Seattle)LIX1
SuperfamilyQ8N485
Human Protein AtlasENSG00000145721
Peptide AtlasQ8N485
HPRD08069
IPIIPI00296593   IPI00967574   
Protein Interaction databases
DIP (DOE-UCLA)Q8N485
IntAct (EBI)Q8N485
FunCoupENSG00000145721
BioGRIDLIX1
STRING (EMBL)LIX1
ZODIACLIX1
Ontologies - Pathways
QuickGOQ8N485
Ontology : AmiGOcytoplasm  autophagy  autophagosome maturation  
Ontology : EGO-EBIcytoplasm  autophagy  autophagosome maturation  
NDEx NetworkLIX1
Atlas of Cancer Signalling NetworkLIX1
Wikipedia pathwaysLIX1
Orthology - Evolution
OrthoDB167410
GeneTree (enSembl)ENSG00000145721
Phylogenetic Trees/Animal Genes : TreeFamLIX1
HOVERGENQ8N485
HOGENOMQ8N485
Homologs : HomoloGeneLIX1
Homology/Alignments : Family Browser (UCSC)LIX1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLIX1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LIX1
dbVarLIX1
ClinVarLIX1
1000_GenomesLIX1 
Exome Variant ServerLIX1
ExAC (Exome Aggregation Consortium)LIX1 (select the gene name)
Genetic variants : HAPMAP167410
Genomic Variants (DGV)LIX1 [DGVbeta]
DECIPHER (Syndromes)5:96427574-96478520  ENSG00000145721
CONAN: Copy Number AnalysisLIX1 
Mutations
ICGC Data PortalLIX1 
TCGA Data PortalLIX1 
Broad Tumor PortalLIX1
OASIS PortalLIX1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLIX1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLIX1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LIX1
DgiDB (Drug Gene Interaction Database)LIX1
DoCM (Curated mutations)LIX1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LIX1 (select a term)
intoGenLIX1
Cancer3DLIX1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610466   
Orphanet
MedgenLIX1
Genetic Testing Registry LIX1
NextProtQ8N485 [Medical]
TSGene167410
GENETestsLIX1
Huge Navigator LIX1 [HugePedia]
snp3D : Map Gene to Disease167410
BioCentury BCIQLIX1
ClinGenLIX1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD167410
Chemical/Pharm GKB GenePA38353
Clinical trialLIX1
Miscellaneous
canSAR (ICR)LIX1 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLIX1
EVEXLIX1
GoPubMedLIX1
iHOPLIX1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:14:33 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.