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LIX1L (limb and CNS expressed 1 like)

Identity

Alias_namesLix1 homolog (mouse) like
Lix1 homolog (chicken)-like
Lix1 homolog (chicken) like
Alias_symbol (synonym)MGC46719
Other alias-
HGNC (Hugo) LIX1L
LocusID (NCBI) 128077
Atlas_Id 56125
Location 1q21.1  [Link to chromosome band 1q21]
Location_base_pair Starts at 145933424 and ends at 145958019 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
UAP1 (1q23.3) / LIX1L (1q21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LIX1L   28715
Cards
Entrez_Gene (NCBI)LIX1L  128077  limb and CNS expressed 1 like
Aliases
GeneCards (Weizmann)LIX1L
Ensembl hg19 (Hinxton)ENSG00000271601 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000271601 [Gene_View]  chr1:145933424-145958019 [Contig_View]  LIX1L [Vega]
ICGC DataPortalENSG00000271601
TCGA cBioPortalLIX1L
AceView (NCBI)LIX1L
Genatlas (Paris)LIX1L
WikiGenes128077
SOURCE (Princeton)LIX1L
Genetics Home Reference (NIH)LIX1L
Genomic and cartography
GoldenPath hg38 (UCSC)LIX1L  -     chr1:145933424-145958019 -  1q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LIX1L  -     1q21.1   [Description]    (hg19-Feb_2009)
EnsemblLIX1L - 1q21.1 [CytoView hg19]  LIX1L - 1q21.1 [CytoView hg38]
Mapping of homologs : NCBILIX1L [Mapview hg19]  LIX1L [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK123675 AK128733 BC035727 CR627381
RefSeq transcript (Entrez)NM_153713
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LIX1L
Cluster EST : UnigeneHs.740619 [ NCBI ]
CGAP (NCI)Hs.740619
Alternative Splicing GalleryENSG00000271601
Gene ExpressionLIX1L [ NCBI-GEO ]   LIX1L [ EBI - ARRAY_EXPRESS ]   LIX1L [ SEEK ]   LIX1L [ MEM ]
Gene Expression Viewer (FireBrowse)LIX1L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)128077
GTEX Portal (Tissue expression)LIX1L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IVB5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IVB5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IVB5
Splice isoforms : SwissVarQ8IVB5
PhosPhoSitePlusQ8IVB5
Domains : Interpro (EBI)LIX1   
Domain families : Pfam (Sanger)LIX1 (PF14954)   
Domain families : Pfam (NCBI)pfam14954   
Conserved Domain (NCBI)LIX1L
DMDM Disease mutations128077
Blocks (Seattle)LIX1L
SuperfamilyQ8IVB5
Human Protein AtlasENSG00000271601
Peptide AtlasQ8IVB5
HPRD14653
IPIIPI00216973   IPI00902947   
Protein Interaction databases
DIP (DOE-UCLA)Q8IVB5
IntAct (EBI)Q8IVB5
FunCoupENSG00000271601
BioGRIDLIX1L
STRING (EMBL)LIX1L
ZODIACLIX1L
Ontologies - Pathways
QuickGOQ8IVB5
Ontology : AmiGOmolecular_function  cellular_component  cytoplasm  biological_process  autophagosome maturation  
Ontology : EGO-EBImolecular_function  cellular_component  cytoplasm  biological_process  autophagosome maturation  
NDEx NetworkLIX1L
Atlas of Cancer Signalling NetworkLIX1L
Wikipedia pathwaysLIX1L
Orthology - Evolution
OrthoDB128077
GeneTree (enSembl)ENSG00000271601
Phylogenetic Trees/Animal Genes : TreeFamLIX1L
HOVERGENQ8IVB5
HOGENOMQ8IVB5
Homologs : HomoloGeneLIX1L
Homology/Alignments : Family Browser (UCSC)LIX1L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLIX1L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LIX1L
dbVarLIX1L
ClinVarLIX1L
1000_GenomesLIX1L 
Exome Variant ServerLIX1L
ExAC (Exome Aggregation Consortium)LIX1L (select the gene name)
Genetic variants : HAPMAP128077
Genomic Variants (DGV)LIX1L [DGVbeta]
DECIPHERLIX1L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLIX1L 
Mutations
ICGC Data PortalLIX1L 
TCGA Data PortalLIX1L 
Broad Tumor PortalLIX1L
OASIS PortalLIX1L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLIX1L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLIX1L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LIX1L
DgiDB (Drug Gene Interaction Database)LIX1L
DoCM (Curated mutations)LIX1L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LIX1L (select a term)
intoGenLIX1L
Cancer3DLIX1L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLIX1L
Genetic Testing Registry LIX1L
NextProtQ8IVB5 [Medical]
TSGene128077
GENETestsLIX1L
Target ValidationLIX1L
Huge Navigator LIX1L [HugePedia]
snp3D : Map Gene to Disease128077
BioCentury BCIQLIX1L
ClinGenLIX1L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD128077
Chemical/Pharm GKB GenePA134915428
Clinical trialLIX1L
Miscellaneous
canSAR (ICR)LIX1L (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLIX1L
EVEXLIX1L
GoPubMedLIX1L
iHOPLIX1L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:40:45 CEST 2017

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