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LKAAEAR1 (LKAAEAR motif containing 1)

Identity

Alias_namesC20orf201
chromosome 20 open reading frame 201
Other alias
HGNC (Hugo) LKAAEAR1
LocusID (NCBI) 198437
Atlas_Id 66125
Location 20q13.33  [Link to chromosome band 20q13]
Location_base_pair Starts at 64083380 and ends at 64084359 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LKAAEAR1   33718
Cards
Entrez_Gene (NCBI)LKAAEAR1  198437  LKAAEAR motif containing 1
AliasesC20orf201
GeneCards (Weizmann)LKAAEAR1
Ensembl hg19 (Hinxton)ENSG00000171695 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171695 [Gene_View]  chr20:64083380-64084359 [Contig_View]  LKAAEAR1 [Vega]
ICGC DataPortalENSG00000171695
TCGA cBioPortalLKAAEAR1
AceView (NCBI)LKAAEAR1
Genatlas (Paris)LKAAEAR1
WikiGenes198437
SOURCE (Princeton)LKAAEAR1
Genetics Home Reference (NIH)LKAAEAR1
Genomic and cartography
GoldenPath hg38 (UCSC)LKAAEAR1  -     chr20:64083380-64084359 -  20q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LKAAEAR1  -     20q13.33   [Description]    (hg19-Feb_2009)
EnsemblLKAAEAR1 - 20q13.33 [CytoView hg19]  LKAAEAR1 - 20q13.33 [CytoView hg38]
Mapping of homologs : NCBILKAAEAR1 [Mapview hg19]  LKAAEAR1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC036837
RefSeq transcript (Entrez)NM_001007125
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LKAAEAR1
Cluster EST : UnigeneHs.570316 [ NCBI ]
CGAP (NCI)Hs.570316
Alternative Splicing GalleryENSG00000171695
Gene ExpressionLKAAEAR1 [ NCBI-GEO ]   LKAAEAR1 [ EBI - ARRAY_EXPRESS ]   LKAAEAR1 [ SEEK ]   LKAAEAR1 [ MEM ]
Gene Expression Viewer (FireBrowse)LKAAEAR1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)198437
GTEX Portal (Tissue expression)LKAAEAR1
Human Protein AtlasENSG00000171695-LKAAEAR1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TD35   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TD35  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TD35
Splice isoforms : SwissVarQ8TD35
PhosPhoSitePlusQ8TD35
Domains : Interpro (EBI)LKAAEAR   
Domain families : Pfam (Sanger)LKAAEAR (PF15478)   
Domain families : Pfam (NCBI)pfam15478   
Conserved Domain (NCBI)LKAAEAR1
DMDM Disease mutations198437
Blocks (Seattle)LKAAEAR1
SuperfamilyQ8TD35
Human Protein Atlas [tissue]ENSG00000171695-LKAAEAR1 [tissue]
Peptide AtlasQ8TD35
HPRD17317
IPIIPI00163488   IPI00152438   
Protein Interaction databases
DIP (DOE-UCLA)Q8TD35
IntAct (EBI)Q8TD35
FunCoupENSG00000171695
BioGRIDLKAAEAR1
STRING (EMBL)LKAAEAR1
ZODIACLKAAEAR1
Ontologies - Pathways
QuickGOQ8TD35
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLKAAEAR1
Atlas of Cancer Signalling NetworkLKAAEAR1
Wikipedia pathwaysLKAAEAR1
Orthology - Evolution
OrthoDB198437
GeneTree (enSembl)ENSG00000171695
Phylogenetic Trees/Animal Genes : TreeFamLKAAEAR1
HOVERGENQ8TD35
HOGENOMQ8TD35
Homologs : HomoloGeneLKAAEAR1
Homology/Alignments : Family Browser (UCSC)LKAAEAR1
Gene fusions - Rearrangements
Tumor Fusion PortalLKAAEAR1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLKAAEAR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LKAAEAR1
dbVarLKAAEAR1
ClinVarLKAAEAR1
1000_GenomesLKAAEAR1 
Exome Variant ServerLKAAEAR1
ExAC (Exome Aggregation Consortium)ENSG00000171695
GNOMAD BrowserENSG00000171695
Genetic variants : HAPMAP198437
Genomic Variants (DGV)LKAAEAR1 [DGVbeta]
DECIPHERLKAAEAR1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLKAAEAR1 
Mutations
ICGC Data PortalLKAAEAR1 
TCGA Data PortalLKAAEAR1 
Broad Tumor PortalLKAAEAR1
OASIS PortalLKAAEAR1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLKAAEAR1
BioMutasearch LKAAEAR1
DgiDB (Drug Gene Interaction Database)LKAAEAR1
DoCM (Curated mutations)LKAAEAR1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LKAAEAR1 (select a term)
intoGenLKAAEAR1
Cancer3DLKAAEAR1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLKAAEAR1
MedgenLKAAEAR1
Genetic Testing Registry LKAAEAR1
NextProtQ8TD35 [Medical]
TSGene198437
GENETestsLKAAEAR1
Target ValidationLKAAEAR1
Huge Navigator LKAAEAR1 [HugePedia]
snp3D : Map Gene to Disease198437
BioCentury BCIQLKAAEAR1
ClinGenLKAAEAR1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD198437
Chemical/Pharm GKB GenePA162378956
Clinical trialLKAAEAR1
Miscellaneous
canSAR (ICR)LKAAEAR1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLKAAEAR1
EVEXLKAAEAR1
GoPubMedLKAAEAR1
iHOPLKAAEAR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:41:49 CET 2017

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