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LLCFC1 (LLLL and CFNLAS motif containing 1)

Identity

Alias_namesC7orf34
chromosome 7 open reading frame 34
Alias_symbol (synonym)CTM-1
Other aliasctm-1
HGNC (Hugo) LLCFC1
LocusID (NCBI) 135927
Atlas_Id 79397
Location 7q34  [Link to chromosome band 7q34]
Location_base_pair Starts at 142939506 and ends at 142940870 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LLCFC1   21750
Cards
Entrez_Gene (NCBI)LLCFC1  135927  LLLL and CFNLAS motif containing 1
AliasesC7orf34; ctm-1
GeneCards (Weizmann)LLCFC1
Ensembl hg19 (Hinxton)ENSG00000165131 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165131 [Gene_View]  chr7:142939506-142940870 [Contig_View]  LLCFC1 [Vega]
ICGC DataPortalENSG00000165131
TCGA cBioPortalLLCFC1
AceView (NCBI)LLCFC1
Genatlas (Paris)LLCFC1
WikiGenes135927
SOURCE (Princeton)LLCFC1
Genetics Home Reference (NIH)LLCFC1
Genomic and cartography
GoldenPath hg38 (UCSC)LLCFC1  -     chr7:142939506-142940870 +  7q34   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LLCFC1  -     7q34   [Description]    (hg19-Feb_2009)
EnsemblLLCFC1 - 7q34 [CytoView hg19]  LLCFC1 - 7q34 [CytoView hg38]
Mapping of homologs : NCBILLCFC1 [Mapview hg19]  LLCFC1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB083483 AB083484 AI990561 AY927625 BC014596
RefSeq transcript (Entrez)NM_178829
RefSeq genomic (Entrez)NC_000007 NC_018918 NG_007492 NT_187562
Consensus coding sequences : CCDS (NCBI)LLCFC1
Cluster EST : UnigeneHs.239676 [ NCBI ]
CGAP (NCI)Hs.239676
Alternative Splicing GalleryENSG00000165131
Gene ExpressionLLCFC1 [ NCBI-GEO ]   LLCFC1 [ EBI - ARRAY_EXPRESS ]   LLCFC1 [ SEEK ]   LLCFC1 [ MEM ]
Gene Expression Viewer (FireBrowse)LLCFC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)135927
GTEX Portal (Tissue expression)LLCFC1
Human Protein AtlasENSG00000165131-LLCFC1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96L11   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96L11  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96L11
Splice isoforms : SwissVarQ96L11
PhosPhoSitePlusQ96L11
Domains : Interpro (EBI)DUF4717   
Domain families : Pfam (Sanger)DUF4717 (PF15838)   
Domain families : Pfam (NCBI)pfam15838   
Conserved Domain (NCBI)LLCFC1
DMDM Disease mutations135927
Blocks (Seattle)LLCFC1
SuperfamilyQ96L11
Human Protein Atlas [tissue]ENSG00000165131-LLCFC1 [tissue]
Peptide AtlasQ96L11
IPIIPI01012816   IPI00607743   IPI00917606   
Protein Interaction databases
DIP (DOE-UCLA)Q96L11
IntAct (EBI)Q96L11
FunCoupENSG00000165131
BioGRIDLLCFC1
STRING (EMBL)LLCFC1
ZODIACLLCFC1
Ontologies - Pathways
QuickGOQ96L11
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkLLCFC1
Atlas of Cancer Signalling NetworkLLCFC1
Wikipedia pathwaysLLCFC1
Orthology - Evolution
OrthoDB135927
GeneTree (enSembl)ENSG00000165131
Phylogenetic Trees/Animal Genes : TreeFamLLCFC1
HOVERGENQ96L11
HOGENOMQ96L11
Homologs : HomoloGeneLLCFC1
Homology/Alignments : Family Browser (UCSC)LLCFC1
Gene fusions - Rearrangements
Tumor Fusion PortalLLCFC1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLLCFC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LLCFC1
dbVarLLCFC1
ClinVarLLCFC1
1000_GenomesLLCFC1 
Exome Variant ServerLLCFC1
ExAC (Exome Aggregation Consortium)ENSG00000165131
GNOMAD BrowserENSG00000165131
Genetic variants : HAPMAP135927
Genomic Variants (DGV)LLCFC1 [DGVbeta]
DECIPHERLLCFC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLLCFC1 
Mutations
ICGC Data PortalLLCFC1 
TCGA Data PortalLLCFC1 
Broad Tumor PortalLLCFC1
OASIS PortalLLCFC1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLLCFC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LLCFC1
DgiDB (Drug Gene Interaction Database)LLCFC1
DoCM (Curated mutations)LLCFC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LLCFC1 (select a term)
intoGenLLCFC1
Cancer3DLLCFC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLLCFC1
MedgenLLCFC1
Genetic Testing Registry LLCFC1
NextProtQ96L11 [Medical]
TSGene135927
GENETestsLLCFC1
Target ValidationLLCFC1
Huge Navigator LLCFC1 [HugePedia]
snp3D : Map Gene to Disease135927
BioCentury BCIQLLCFC1
ClinGenLLCFC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD135927
Chemical/Pharm GKB GenePA134972511
Clinical trialLLCFC1
Miscellaneous
canSAR (ICR)LLCFC1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLLCFC1
EVEXLLCFC1
GoPubMedLLCFC1
iHOPLLCFC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:16:27 CET 2017

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