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LLPH (LLP homolog, long-term synaptic facilitation (Aplysia))

Identity

Alias_namesC12orf31
chromosome 12 open reading frame 31
LLP homolog, long-term synaptic facilitation (Aplysia)
Alias_symbol (synonym)MGC14817
hLLP
Other alias
HGNC (Hugo) LLPH
LocusID (NCBI) 84298
Atlas_Id 66130
Location 12q14.3  [Link to chromosome band 12q14]
Location_base_pair Starts at 66516849 and ends at 66524533 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
LLPH (12q14.3) / ATG7 (3p25.3)LLPH (12q14.3) / BTBD10 (11p15.2)LLPH (12q14.3) / KAT2B (3p24.3)
LLPH (12q14.3) / LLPH (12q14.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LLPH   28229
Cards
Entrez_Gene (NCBI)LLPH  84298  LLP homolog, long-term synaptic facilitation (Aplysia)
AliasesC12orf31; hLLP
GeneCards (Weizmann)LLPH
Ensembl hg19 (Hinxton) [Gene_View]  chr12:66516849-66524533 [Contig_View]  LLPH [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr12:66516849-66524533 [Contig_View]  LLPH [Vega]
TCGA cBioPortalLLPH
AceView (NCBI)LLPH
Genatlas (Paris)LLPH
WikiGenes84298
SOURCE (Princeton)LLPH
Genetics Home Reference (NIH)LLPH
Genomic and cartography
GoldenPath hg19 (UCSC)LLPH  -     chr12:66516849-66524533 -  12q14.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LLPH  -     12q14.3   [Description]    (hg38-Dec_2013)
EnsemblLLPH - 12q14.3 [CytoView hg19]  LLPH - 12q14.3 [CytoView hg38]
Mapping of homologs : NCBILLPH [Mapview hg19]  LLPH [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057947 AK091568 BC006002 BC070232 BC107780
RefSeq transcript (Entrez)NM_032338
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_029419 NW_004929384
Consensus coding sequences : CCDS (NCBI)LLPH
Cluster EST : UnigeneHs.504820 [ NCBI ]
CGAP (NCI)Hs.504820
Gene ExpressionLLPH [ NCBI-GEO ]   LLPH [ EBI - ARRAY_EXPRESS ]   LLPH [ SEEK ]   LLPH [ MEM ]
Gene Expression Viewer (FireBrowse)LLPH [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84298
GTEX Portal (Tissue expression)LLPH
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BRT6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BRT6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BRT6
Splice isoforms : SwissVarQ9BRT6
PhosPhoSitePlusQ9BRT6
Domains : Interpro (EBI)LAPS18-like   
Domain families : Pfam (Sanger)Laps (PF10169)   
Domain families : Pfam (NCBI)pfam10169   
Conserved Domain (NCBI)LLPH
DMDM Disease mutations84298
Blocks (Seattle)LLPH
SuperfamilyQ9BRT6
Peptide AtlasQ9BRT6
HPRD11308
IPIIPI00031615   IPI00022947   
Protein Interaction databases
DIP (DOE-UCLA)Q9BRT6
IntAct (EBI)Q9BRT6
BioGRIDLLPH
STRING (EMBL)LLPH
ZODIACLLPH
Ontologies - Pathways
QuickGOQ9BRT6
Ontology : AmiGOpoly(A) RNA binding  
Ontology : EGO-EBIpoly(A) RNA binding  
NDEx NetworkLLPH
Atlas of Cancer Signalling NetworkLLPH
Wikipedia pathwaysLLPH
Orthology - Evolution
OrthoDB84298
Phylogenetic Trees/Animal Genes : TreeFamLLPH
HOVERGENQ9BRT6
HOGENOMQ9BRT6
Homologs : HomoloGeneLLPH
Homology/Alignments : Family Browser (UCSC)LLPH
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLLPH [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LLPH
dbVarLLPH
ClinVarLLPH
1000_GenomesLLPH 
Exome Variant ServerLLPH
ExAC (Exome Aggregation Consortium)LLPH (select the gene name)
Genetic variants : HAPMAP84298
Genomic Variants (DGV)LLPH [DGVbeta]
DECIPHER (Syndromes)12:66516849-66524533  
CONAN: Copy Number AnalysisLLPH 
Mutations
ICGC Data PortalLLPH 
TCGA Data PortalLLPH 
Broad Tumor PortalLLPH
OASIS PortalLLPH [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLLPH  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLLPH
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LLPH
DgiDB (Drug Gene Interaction Database)LLPH
DoCM (Curated mutations)LLPH (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LLPH (select a term)
intoGenLLPH
Cancer3DLLPH(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLLPH
Genetic Testing Registry LLPH
NextProtQ9BRT6 [Medical]
TSGene84298
GENETestsLLPH
Huge Navigator LLPH [HugePedia]
snp3D : Map Gene to Disease84298
BioCentury BCIQLLPH
ClinGenLLPH
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84298
Chemical/Pharm GKB GenePA164722116
Clinical trialLLPH
Miscellaneous
canSAR (ICR)LLPH (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLLPH
EVEXLLPH
GoPubMedLLPH
iHOPLLPH
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 12:14:35 CET 2017

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