Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LMAN2L (lectin, mannose binding 2 like)

Identity

Alias (NCBI)MRT52
VIPL
HGNC (Hugo) LMAN2L
HGNC Alias symbDKFZp564L2423
VIPL
HGNC Previous namelectin, mannose-binding 2-like
LocusID (NCBI) 81562
Atlas_Id 66132
Location 2q11.2  [Link to chromosome band 2q11]
Location_base_pair Starts at 96705930 and ends at 96740076 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
LMAN2L (2q11.2) / FAM178B (2q11.2)LMAN2L (2q11.2) / FER1L5 (2q11.2)LMAN2L (2q11.2) / LMAN2L (2q11.2)
MECOM (3q26.2) / LMAN2L (2q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  LMAN2L/FAM178B (2q11)
LMAN2L/FER1L5 (2q11)


External links

Nomenclature
HGNC (Hugo)LMAN2L   19263
Cards
Entrez_Gene (NCBI)LMAN2L    lectin, mannose binding 2 like
AliasesMRT52; VIPL
GeneCards (Weizmann)LMAN2L
Ensembl hg19 (Hinxton)ENSG00000114988 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000114988 [Gene_View]  ENSG00000114988 [Sequence]  chr2:96705930-96740076 [Contig_View]  LMAN2L [Vega]
ICGC DataPortalENSG00000114988
TCGA cBioPortalLMAN2L
AceView (NCBI)LMAN2L
Genatlas (Paris)LMAN2L
SOURCE (Princeton)LMAN2L
Genetics Home Reference (NIH)LMAN2L
Genomic and cartography
GoldenPath hg38 (UCSC)LMAN2L  -     chr2:96705930-96740076 -  2q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LMAN2L  -     2q11.2   [Description]    (hg19-Feb_2009)
GoldenPathLMAN2L - 2q11.2 [CytoView hg19]  LMAN2L - 2q11.2 [CytoView hg38]
ImmunoBaseENSG00000114988
genome Data Viewer NCBILMAN2L [Mapview hg19]  
OMIM609552   616887   
Gene and transcription
Genbank (Entrez)AJ549957 AK075347 AK222828 AK295463 AK299740
RefSeq transcript (Entrez)NM_001142292 NM_001322346 NM_001322347 NM_001322350 NM_001322351 NM_001322352 NM_001322354 NM_001322355 NM_001322356 NM_030805
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LMAN2L
Alternative Splicing GalleryENSG00000114988
Gene ExpressionLMAN2L [ NCBI-GEO ]   LMAN2L [ EBI - ARRAY_EXPRESS ]   LMAN2L [ SEEK ]   LMAN2L [ MEM ]
Gene Expression Viewer (FireBrowse)LMAN2L [ Firebrowse - Broad ]
GenevisibleExpression of LMAN2L in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81562
GTEX Portal (Tissue expression)LMAN2L
Human Protein AtlasENSG00000114988-LMAN2L [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H0V9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H0V9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H0V9
Splice isoforms : SwissVarQ9H0V9
PhosPhoSitePlusQ9H0V9
Domaine pattern : Prosite (Expaxy)L_LECTIN_LIKE (PS51328)   
Domains : Interpro (EBI)ConA-like_dom_sf    Lectin_leg   
Domain families : Pfam (Sanger)Lectin_leg-like (PF03388)   
Domain families : Pfam (NCBI)pfam03388   
Conserved Domain (NCBI)LMAN2L
Blocks (Seattle)LMAN2L
SuperfamilyQ9H0V9
Human Protein Atlas [tissue]ENSG00000114988-LMAN2L [tissue]
Peptide AtlasQ9H0V9
HPRD17286
IPIIPI00744259   IPI00218337   IPI00909084   IPI01014225   IPI01015027   IPI00925586   IPI00925903   IPI00926654   IPI00925215   
Protein Interaction databases
DIP (DOE-UCLA)Q9H0V9
IntAct (EBI)Q9H0V9
BioGRIDLMAN2L
STRING (EMBL)LMAN2L
ZODIACLMAN2L
Ontologies - Pathways
QuickGOQ9H0V9
Ontology : AmiGOGolgi membrane  mannose binding  mannose binding  endoplasmic reticulum membrane  endoplasmic reticulum membrane  endoplasmic reticulum-Golgi intermediate compartment  Golgi apparatus  protein folding  ER to Golgi vesicle-mediated transport  ER to Golgi vesicle-mediated transport  endoplasmic reticulum organization  Golgi organization  protein transport  integral component of membrane  COPII-coated ER to Golgi transport vesicle  COPII-coated ER to Golgi transport vesicle  metal ion binding  
Ontology : EGO-EBIGolgi membrane  mannose binding  mannose binding  endoplasmic reticulum membrane  endoplasmic reticulum membrane  endoplasmic reticulum-Golgi intermediate compartment  Golgi apparatus  protein folding  ER to Golgi vesicle-mediated transport  ER to Golgi vesicle-mediated transport  endoplasmic reticulum organization  Golgi organization  protein transport  integral component of membrane  COPII-coated ER to Golgi transport vesicle  COPII-coated ER to Golgi transport vesicle  metal ion binding  
NDEx NetworkLMAN2L
Atlas of Cancer Signalling NetworkLMAN2L
Wikipedia pathwaysLMAN2L
Orthology - Evolution
OrthoDB81562
GeneTree (enSembl)ENSG00000114988
Phylogenetic Trees/Animal Genes : TreeFamLMAN2L
HOGENOMQ9H0V9
Homologs : HomoloGeneLMAN2L
Homology/Alignments : Family Browser (UCSC)LMAN2L
Gene fusions - Rearrangements
Fusion : QuiverLMAN2L
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLMAN2L [hg38]
dbVarLMAN2L
ClinVarLMAN2L
MonarchLMAN2L
1000_GenomesLMAN2L 
Exome Variant ServerLMAN2L
GNOMAD BrowserENSG00000114988
Varsome BrowserLMAN2L
Genomic Variants (DGV)LMAN2L [DGVbeta]
DECIPHERLMAN2L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLMAN2L 
Mutations
ICGC Data PortalLMAN2L 
TCGA Data PortalLMAN2L 
Broad Tumor PortalLMAN2L
OASIS PortalLMAN2L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLMAN2L  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DLMAN2L
Mutations and Diseases : HGMDLMAN2L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LMAN2L
DgiDB (Drug Gene Interaction Database)LMAN2L
DoCM (Curated mutations)LMAN2L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LMAN2L (select a term)
intoGenLMAN2L
Cancer3DLMAN2L(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609552    616887   
Orphanet11804   
DisGeNETLMAN2L
MedgenLMAN2L
Genetic Testing Registry LMAN2L
NextProtQ9H0V9 [Medical]
GENETestsLMAN2L
Target ValidationLMAN2L
Huge Navigator LMAN2L [HugePedia]
ClinGenLMAN2L
Clinical trials, drugs, therapy
MyCancerGenomeLMAN2L
Protein Interactions : CTD
Pharm GKB GenePA134937652
Clinical trialLMAN2L
Miscellaneous
canSAR (ICR)LMAN2L (select the gene name)
HarmonizomeLMAN2L
DataMed IndexLMAN2L
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLMAN2L
EVEXLMAN2L
GoPubMedLMAN2L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 5 17:05:34 CET 2020

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.