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LMAN2L (lectin, mannose-binding 2-like)

Identity

Alias_nameslectin, mannose-binding 2-like
Alias_symbol (synonym)DKFZp564L2423
VIPL
Other alias
HGNC (Hugo) LMAN2L
LocusID (NCBI) 81562
Atlas_Id 66132
Location 2q11.2  [Link to chromosome band 2q11]
Location_base_pair Starts at 97371667 and ends at 97405813 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
LMAN2L (2q11.2) / FAM178B (2q11.2)LMAN2L (2q11.2) / FER1L5 (2q11.2)LMAN2L (2q11.2) / LMAN2L (2q11.2)
MECOM (3q26.2) / LMAN2L (2q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LMAN2L   19263
Cards
Entrez_Gene (NCBI)LMAN2L  81562  lectin, mannose-binding 2-like
AliasesVIPL
GeneCards (Weizmann)LMAN2L
Ensembl hg19 (Hinxton)ENSG00000114988 [Gene_View]  chr2:97371667-97405813 [Contig_View]  LMAN2L [Vega]
Ensembl hg38 (Hinxton)ENSG00000114988 [Gene_View]  chr2:97371667-97405813 [Contig_View]  LMAN2L [Vega]
ICGC DataPortalENSG00000114988
TCGA cBioPortalLMAN2L
AceView (NCBI)LMAN2L
Genatlas (Paris)LMAN2L
WikiGenes81562
SOURCE (Princeton)LMAN2L
Genetics Home Reference (NIH)LMAN2L
Genomic and cartography
GoldenPath hg19 (UCSC)LMAN2L  -     chr2:97371667-97405813 -  2q11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LMAN2L  -     2q11.2   [Description]    (hg38-Dec_2013)
EnsemblLMAN2L - 2q11.2 [CytoView hg19]  LMAN2L - 2q11.2 [CytoView hg38]
Mapping of homologs : NCBILMAN2L [Mapview hg19]  LMAN2L [Mapview hg38]
OMIM609552   
Gene and transcription
Genbank (Entrez)AJ549957 AK075347 AK222828 AK295463 AK299740
RefSeq transcript (Entrez)NM_001142292 NM_030805
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005403 NW_004929303
Consensus coding sequences : CCDS (NCBI)LMAN2L
Cluster EST : UnigeneHs.655743 [ NCBI ]
CGAP (NCI)Hs.655743
Alternative Splicing GalleryENSG00000114988
Gene ExpressionLMAN2L [ NCBI-GEO ]   LMAN2L [ EBI - ARRAY_EXPRESS ]   LMAN2L [ SEEK ]   LMAN2L [ MEM ]
Gene Expression Viewer (FireBrowse)LMAN2L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81562
GTEX Portal (Tissue expression)LMAN2L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H0V9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H0V9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H0V9
Splice isoforms : SwissVarQ9H0V9
PhosPhoSitePlusQ9H0V9
Domaine pattern : Prosite (Expaxy)L_LECTIN_LIKE (PS51328)   
Domains : Interpro (EBI)ConA-like_dom    Lectin_leg   
Domain families : Pfam (Sanger)Lectin_leg-like (PF03388)   
Domain families : Pfam (NCBI)pfam03388   
Conserved Domain (NCBI)LMAN2L
DMDM Disease mutations81562
Blocks (Seattle)LMAN2L
SuperfamilyQ9H0V9
Human Protein AtlasENSG00000114988
Peptide AtlasQ9H0V9
HPRD17286
IPIIPI00744259   IPI00218337   IPI00909084   IPI01014225   IPI01015027   IPI00925586   IPI00925903   IPI00926654   IPI00925215   
Protein Interaction databases
DIP (DOE-UCLA)Q9H0V9
IntAct (EBI)Q9H0V9
FunCoupENSG00000114988
BioGRIDLMAN2L
STRING (EMBL)LMAN2L
ZODIACLMAN2L
Ontologies - Pathways
QuickGOQ9H0V9
Ontology : AmiGOGolgi membrane  mannose binding  endoplasmic reticulum membrane  Golgi apparatus  protein folding  ER to Golgi vesicle-mediated transport  protein transport  integral component of membrane  ER to Golgi transport vesicle  metal ion binding  
Ontology : EGO-EBIGolgi membrane  mannose binding  endoplasmic reticulum membrane  Golgi apparatus  protein folding  ER to Golgi vesicle-mediated transport  protein transport  integral component of membrane  ER to Golgi transport vesicle  metal ion binding  
NDEx NetworkLMAN2L
Atlas of Cancer Signalling NetworkLMAN2L
Wikipedia pathwaysLMAN2L
Orthology - Evolution
OrthoDB81562
GeneTree (enSembl)ENSG00000114988
Phylogenetic Trees/Animal Genes : TreeFamLMAN2L
HOVERGENQ9H0V9
HOGENOMQ9H0V9
Homologs : HomoloGeneLMAN2L
Homology/Alignments : Family Browser (UCSC)LMAN2L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLMAN2L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LMAN2L
dbVarLMAN2L
ClinVarLMAN2L
1000_GenomesLMAN2L 
Exome Variant ServerLMAN2L
ExAC (Exome Aggregation Consortium)LMAN2L (select the gene name)
Genetic variants : HAPMAP81562
Genomic Variants (DGV)LMAN2L [DGVbeta]
DECIPHER (Syndromes)2:97371667-97405813  ENSG00000114988
CONAN: Copy Number AnalysisLMAN2L 
Mutations
ICGC Data PortalLMAN2L 
TCGA Data PortalLMAN2L 
Broad Tumor PortalLMAN2L
OASIS PortalLMAN2L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLMAN2L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLMAN2L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LMAN2L
DgiDB (Drug Gene Interaction Database)LMAN2L
DoCM (Curated mutations)LMAN2L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LMAN2L (select a term)
intoGenLMAN2L
Cancer3DLMAN2L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609552   
Orphanet11804   
MedgenLMAN2L
Genetic Testing Registry LMAN2L
NextProtQ9H0V9 [Medical]
TSGene81562
GENETestsLMAN2L
Huge Navigator LMAN2L [HugePedia]
snp3D : Map Gene to Disease81562
BioCentury BCIQLMAN2L
ClinGenLMAN2L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81562
Chemical/Pharm GKB GenePA134937652
Clinical trialLMAN2L
Miscellaneous
canSAR (ICR)LMAN2L (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLMAN2L
EVEXLMAN2L
GoPubMedLMAN2L
iHOPLMAN2L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:14:35 CET 2017

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