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LMBR1L (limb development membrane protein 1 like)

Identity

Alias_nameslimb region 1 homolog (mouse)-like
limb development membrane protein 1-like
Alias_symbol (synonym)FLJ10494
KIAA1174
Other aliasLIMR
HGNC (Hugo) LMBR1L
LocusID (NCBI) 55716
Atlas_Id 66134
Location 12q13.12  [Link to chromosome band 12q13]
Location_base_pair Starts at 49097140 and ends at 49110900 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
KMT2B (19q13.12) / LMBR1L (12q13.12)KMT2D (12q13.12) / LMBR1L (12q13.12)LMBR1L (12q13.12) / KCNK6 (19q13.2)
LMBR1L (12q13.12) / VDR (12q13.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LMBR1L   18268
Cards
Entrez_Gene (NCBI)LMBR1L  55716  limb development membrane protein 1 like
AliasesLIMR
GeneCards (Weizmann)LMBR1L
Ensembl hg19 (Hinxton)ENSG00000139636 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000139636 [Gene_View]  chr12:49097140-49110900 [Contig_View]  LMBR1L [Vega]
ICGC DataPortalENSG00000139636
TCGA cBioPortalLMBR1L
AceView (NCBI)LMBR1L
Genatlas (Paris)LMBR1L
WikiGenes55716
SOURCE (Princeton)LMBR1L
Genetics Home Reference (NIH)LMBR1L
Genomic and cartography
GoldenPath hg38 (UCSC)LMBR1L  -     chr12:49097140-49110900 -  12q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LMBR1L  -     12q13.12   [Description]    (hg19-Feb_2009)
EnsemblLMBR1L - 12q13.12 [CytoView hg19]  LMBR1L - 12q13.12 [CytoView hg38]
Mapping of homologs : NCBILMBR1L [Mapview hg19]  LMBR1L [Mapview hg38]
OMIM610007   
Gene and transcription
Genbank (Entrez)AB033000 AF260728 AK001356 AK001651 AK093570
RefSeq transcript (Entrez)NM_001300750 NM_001300751 NM_018113
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LMBR1L
Cluster EST : UnigeneHs.272838 [ NCBI ]
CGAP (NCI)Hs.272838
Alternative Splicing GalleryENSG00000139636
Gene ExpressionLMBR1L [ NCBI-GEO ]   LMBR1L [ EBI - ARRAY_EXPRESS ]   LMBR1L [ SEEK ]   LMBR1L [ MEM ]
Gene Expression Viewer (FireBrowse)LMBR1L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55716
GTEX Portal (Tissue expression)LMBR1L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UX01   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UX01  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UX01
Splice isoforms : SwissVarQ6UX01
PhosPhoSitePlusQ6UX01
Domains : Interpro (EBI)LIMR    LMBR1-like_membr_prot   
Domain families : Pfam (Sanger)LMBR1 (PF04791)   
Domain families : Pfam (NCBI)pfam04791   
Conserved Domain (NCBI)LMBR1L
DMDM Disease mutations55716
Blocks (Seattle)LMBR1L
SuperfamilyQ6UX01
Human Protein AtlasENSG00000139636
Peptide AtlasQ6UX01
HPRD17276
IPIIPI00186336   IPI00642776   IPI00386768   IPI00018238   IPI00657654   IPI00796574   IPI00910444   IPI01021419   IPI01021579   IPI01021213   IPI01021103   IPI01023018   IPI01022741   IPI01021284   IPI01021427   IPI00878683   
Protein Interaction databases
DIP (DOE-UCLA)Q6UX01
IntAct (EBI)Q6UX01
FunCoupENSG00000139636
BioGRIDLMBR1L
STRING (EMBL)LMBR1L
ZODIACLMBR1L
Ontologies - Pathways
QuickGOQ6UX01
Ontology : AmiGOplasma membrane  endocytosis  integral component of membrane  
Ontology : EGO-EBIplasma membrane  endocytosis  integral component of membrane  
NDEx NetworkLMBR1L
Atlas of Cancer Signalling NetworkLMBR1L
Wikipedia pathwaysLMBR1L
Orthology - Evolution
OrthoDB55716
GeneTree (enSembl)ENSG00000139636
Phylogenetic Trees/Animal Genes : TreeFamLMBR1L
HOVERGENQ6UX01
HOGENOMQ6UX01
Homologs : HomoloGeneLMBR1L
Homology/Alignments : Family Browser (UCSC)LMBR1L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLMBR1L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LMBR1L
dbVarLMBR1L
ClinVarLMBR1L
1000_GenomesLMBR1L 
Exome Variant ServerLMBR1L
ExAC (Exome Aggregation Consortium)LMBR1L (select the gene name)
Genetic variants : HAPMAP55716
Genomic Variants (DGV)LMBR1L [DGVbeta]
DECIPHERLMBR1L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLMBR1L 
Mutations
ICGC Data PortalLMBR1L 
TCGA Data PortalLMBR1L 
Broad Tumor PortalLMBR1L
OASIS PortalLMBR1L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLMBR1L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLMBR1L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LMBR1L
DgiDB (Drug Gene Interaction Database)LMBR1L
DoCM (Curated mutations)LMBR1L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LMBR1L (select a term)
intoGenLMBR1L
Cancer3DLMBR1L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610007   
Orphanet
MedgenLMBR1L
Genetic Testing Registry LMBR1L
NextProtQ6UX01 [Medical]
TSGene55716
GENETestsLMBR1L
Huge Navigator LMBR1L [HugePedia]
snp3D : Map Gene to Disease55716
BioCentury BCIQLMBR1L
ClinGenLMBR1L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55716
Chemical/Pharm GKB GenePA142671545
Clinical trialLMBR1L
Miscellaneous
canSAR (ICR)LMBR1L (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLMBR1L
EVEXLMBR1L
GoPubMedLMBR1L
iHOPLMBR1L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:23:36 CEST 2017

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