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LMBRD2 (LMBR1 domain containing 2)

Identity

Alias_symbol (synonym)DKFZp434H2226
Other alias-
HGNC (Hugo) LMBRD2
LocusID (NCBI) 92255
Atlas_Id 66135
Location 5p13.2  [Link to chromosome band 5p13]
Location_base_pair Starts at 36103312 and ends at 36151913 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LMBRD2 (5p13.2) / KCNMB1 (5q35.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LMBRD2   25287
Cards
Entrez_Gene (NCBI)LMBRD2  92255  LMBR1 domain containing 2
Aliases
GeneCards (Weizmann)LMBRD2
Ensembl hg19 (Hinxton)ENSG00000164187 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164187 [Gene_View]  chr5:36103312-36151913 [Contig_View]  LMBRD2 [Vega]
ICGC DataPortalENSG00000164187
TCGA cBioPortalLMBRD2
AceView (NCBI)LMBRD2
Genatlas (Paris)LMBRD2
WikiGenes92255
SOURCE (Princeton)LMBRD2
Genetics Home Reference (NIH)LMBRD2
Genomic and cartography
GoldenPath hg38 (UCSC)LMBRD2  -     chr5:36103312-36151913 -  5p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LMBRD2  -     5p13.2   [Description]    (hg19-Feb_2009)
EnsemblLMBRD2 - 5p13.2 [CytoView hg19]  LMBRD2 - 5p13.2 [CytoView hg38]
Mapping of homologs : NCBILMBRD2 [Mapview hg19]  LMBRD2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK091295 AK094621 AK300433 AK307575 AL137370
RefSeq transcript (Entrez)NM_001007527
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LMBRD2
Cluster EST : UnigeneHs.599179 [ NCBI ]
CGAP (NCI)Hs.599179
Alternative Splicing GalleryENSG00000164187
Gene ExpressionLMBRD2 [ NCBI-GEO ]   LMBRD2 [ EBI - ARRAY_EXPRESS ]   LMBRD2 [ SEEK ]   LMBRD2 [ MEM ]
Gene Expression Viewer (FireBrowse)LMBRD2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)92255
GTEX Portal (Tissue expression)LMBRD2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ68DH5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ68DH5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ68DH5
Splice isoforms : SwissVarQ68DH5
PhosPhoSitePlusQ68DH5
Domains : Interpro (EBI)LMBR1-like_membr_prot   
Domain families : Pfam (Sanger)LMBR1 (PF04791)   
Domain families : Pfam (NCBI)pfam04791   
Conserved Domain (NCBI)LMBRD2
DMDM Disease mutations92255
Blocks (Seattle)LMBRD2
SuperfamilyQ68DH5
Human Protein AtlasENSG00000164187
Peptide AtlasQ68DH5
HPRD16813
IPIIPI00017940   IPI01009709   
Protein Interaction databases
DIP (DOE-UCLA)Q68DH5
IntAct (EBI)Q68DH5
FunCoupENSG00000164187
BioGRIDLMBRD2
STRING (EMBL)LMBRD2
ZODIACLMBRD2
Ontologies - Pathways
QuickGOQ68DH5
Ontology : AmiGOmembrane  integral component of membrane  
Ontology : EGO-EBImembrane  integral component of membrane  
NDEx NetworkLMBRD2
Atlas of Cancer Signalling NetworkLMBRD2
Wikipedia pathwaysLMBRD2
Orthology - Evolution
OrthoDB92255
GeneTree (enSembl)ENSG00000164187
Phylogenetic Trees/Animal Genes : TreeFamLMBRD2
HOVERGENQ68DH5
HOGENOMQ68DH5
Homologs : HomoloGeneLMBRD2
Homology/Alignments : Family Browser (UCSC)LMBRD2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLMBRD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LMBRD2
dbVarLMBRD2
ClinVarLMBRD2
1000_GenomesLMBRD2 
Exome Variant ServerLMBRD2
ExAC (Exome Aggregation Consortium)LMBRD2 (select the gene name)
Genetic variants : HAPMAP92255
Genomic Variants (DGV)LMBRD2 [DGVbeta]
DECIPHERLMBRD2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLMBRD2 
Mutations
ICGC Data PortalLMBRD2 
TCGA Data PortalLMBRD2 
Broad Tumor PortalLMBRD2
OASIS PortalLMBRD2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLMBRD2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLMBRD2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LMBRD2
DgiDB (Drug Gene Interaction Database)LMBRD2
DoCM (Curated mutations)LMBRD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LMBRD2 (select a term)
intoGenLMBRD2
Cancer3DLMBRD2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLMBRD2
Genetic Testing Registry LMBRD2
NextProtQ68DH5 [Medical]
TSGene92255
GENETestsLMBRD2
Target ValidationLMBRD2
Huge Navigator LMBRD2 [HugePedia]
snp3D : Map Gene to Disease92255
BioCentury BCIQLMBRD2
ClinGenLMBRD2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD92255
Chemical/Pharm GKB GenePA142671541
Clinical trialLMBRD2
Miscellaneous
canSAR (ICR)LMBRD2 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLMBRD2
EVEXLMBRD2
GoPubMedLMBRD2
iHOPLMBRD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:59:46 CEST 2017

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